| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0710 |
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| Symbol | metH |
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| ID | 4921261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 807370 |
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| End bp | 811092 |
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| Gene Length | 3723 bp |
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| Protein Length | 1240 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162243 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001092841 |
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| Protein GI | 127511644 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCC AATCCCCTGT TCGAAACGTA AGGCAGATTA ACGACGCGAT CCGCGCGCGG
CTCAATAAGG AAATTTTGAT CCTCGACGGC GCCATGGGCA CCATGATTCA GAACCACAAG
CTGGAGGAGG CCGACTTTCG CGGCGAGCGC TTCAAGCAGT GGCCCTGCGA TCTCAAGGGT
AACAACGACC TGTTGGTGCT GACCCAACCC GAGCTTATCA AGCAGATCCA CAGAGATTAC
CTGCTGGCGG GCGCCGACAT CATAGAGACC AACACCTTCA ACGCCACCCA GGTGGCCATG
GCCGACTATG AGATGCAGGA GCTGTCACGG GAGATCAACC TTGAAGGCGC CCGACTCGCC
CGCACCGCCT GTGATGAGGT TGCCGCCGAA AGCGGTCGTC AATGCTATGT GGCCGGGGTT
CTCGGACCCA CCAACCGCAC CTGCTCCATC AGCCCGGATG TGAACGACCC TGGCTATCGT
AATATCCATT TCGACGATCT GGTAGAGGCC TATATCGAGT CGACCCAGGC CCTTATCGAG
GGCGGCGCCG ACATCATCAT GGTCGAGACC ATTTTCGATA CCCTCAACGC CAAGGCGGCG
CTGTTTGCCA TCGAAACCCT GTTCGACCAG CTGGGCCAGC GTCTGCCGGT GATGATCTCG
GGCACCATTA CCGATGCCTC GGGCCGCACC CTGACGGGCC AAACTACAGA AGCCTTCTAT
AATTCGCTGC GCCACGTGAA GCCGCTCTCC ATCGGCCTCA ATTGCGCCCT TGGGCCACAG
GAGCTACGCC CCTATGTCGA GGAGCTGTCG AAAATCGCCG AGTGTTATGT GTCGGCGCAC
CCCAACGCCG GCCTGCCCAA CGAATTTGGC GGCTATGACG AGACCCCGGA GCAGATGGCC
GAGGTGATCG GCCCCTGGGC CGAGGAAGGC CTGCTCAACA TCATAGGCGG CTGCTGCGGC
ACCACCCCAG ACCATATCAA GGCAATCCGC GCCGCCGTCA TCAAGCACGG CGCCCGCGAG
CTGCCGGATC TGCCCGTGGC CTGTCGCCTC TCAGGCCTGG AGCCGCTGAC CATAGATGCC
GATTCCCTGT TTGTGAACGT GGGCGAGCGC ACCAATGTGA CTGGCTCGGC CAAGTTTCTG
CGCCTGATCA AGACAGGCGA ATATGAAGAG GCCCTGTCGG TCGCCAGGGA TCAGGTGGAA
AACGGCGCCC AGATCATCGA CATCAACATG GACGAGGGGA TGCTGGACGG TGTCGAGGTG
ATGCAGAAGT TCCTCAACCT TATCGCCTCC GAGCCCGACA TCAGCCGGGT ACCCATCATG
ATCGACTCCT CCAAGTGGGA GGTGATCGAG GCCGGACTCA AGTGCATTCA GGGCAAGGGC
GTGGTCAACT CCATCTCCCT CAAGGAGGGT GAGGCCAAGT TTATCGAGCA GGCCACCCTA
GTGAAACGCT ACGGCGCGGC GGCCATCATC ATGGCCTTCG ACGAAGTTGG CCAGGCCGAT
ACCATGGCGC GCAAGATAGA GATCTGTACC CGCGCCTACC GGGTATTGGT GGATAAGGTG
GGCTTCCCGC CTGAAGATAT CATCTTCGAC CCCAACATAT TCGCCATCGC CACCGGCATC
GACGAGCACG ATAACTATGC GGTGGACTTC ATCGAGGCGA CGCGCGAGAT CAAGCGTACC
CTGCCCCATG CCATGATCTC CGGCGGCGTG TCTAACGTCT CCTTCTCCTT CCGCGGCAAC
AACCCGGTGC GCGAGGCGAT CCACGCCGTG TTCCTCTATC ACGCCATTCA GGCGGGAATG
GACATGGGCA TAGTCAACGC CGGGCAGCTG GCGATCTATG ACGATATCGA TCCTGATCTT
AAGGCCAGGG TAGAGGCCGT GGTGCAGAAC CTGCCCTGCC CGGTGCAAGG GTCGAACAAC
ACAGAACAGC TACTGGAGAT CGCCGAGCAG TACCGTGGCG ACGGTGCCGC GGGCGCCAAG
AAGGAAGATC TCGAGTGGCG CAGCTGGCCG GTCAACAAGC GGCTGGAGCA CGCCCTGGTA
AAGGGGATCA CAGAGTTTAT CGACCAGGAC ACAGAAGAGG CGCGCCAGCT GGCCAGCCGT
CCTCTGGATG TGATCGAAGG CCCGCTGATG GATGGCATGA ACGTGGTCGG CGACCTGTTT
GGTTCGGGCA AGATGTTCCT GCCCCAGGTG GTGAAATCTG CGCGGGTGAT GAAGAAGGCC
GTAGCCTACC TCAATCCCTA CATTGAAGCG GAAAAAGTCG AGGGCGAGTC CAACGGCAAG
ATCCTCATGG TGACGGTAAA GGGCGACGTG CACGACATAG GCAAGAACAT CGTCGGCGTG
GTGCTGGCCT GTAACGGCTA CGAGGTGGTG GACCTCGGCG TCATGGTGCC GGTCGAGAAG
ATCATAGAGG TCGCCAAGGC GGAAAAGGTA GATATCATAG GCATGTCGGG GCTTATCACC
CCGAGCTTGG ATGAAATGGT GCACAACGTC AAAGCCTTCC ACAAGGCGGG GCTGAATATT
CCCTCCATCA TAGGCGGCGC CACCTGCTCC AAGATCCACA CGGCAGTGAA AATCGCACCC
CACGCCCCCG AAGGCGCCAT CTATATCGCC GACGCCTCGC GCGCCGTGCC CATGGTGGCC
AAGCTGATCA ACAAGGAGAC CCGTCAGGCG ACCATAGATG CCGCCTACGA GGAATATCGG
GTGATGCGCG ACAAACGCAA CTCACAGGCC AAGCGCAAGC AGATCGTCTC CCTGGAGGCC
GCACGGGAAA ATCGCTGCCA GCAAGACTGG AACGCCCATA CGCCTTTCGT TCCGAATCAA
CTGGGCAGAC AGGTGTTTGA CGACTATCCG CTGGAAGACC TGGTCGATCG CATCGACTGG
ACGCCATTTT TCCGCAGCTG GGAGCTACAC GGCCACTTCC CCAAGATCCT CGATGACGAG
GTGGTAGGCG AAGAGGCGCG CAAGCTCTAT CAAGATGCCA AGGCGATGCT CAAGACCATA
ATCGATGAGA AGTGGCTCAC GGCCAAGGCG GTCATCGGCC TCTTCCCGGC CAACACGGTC
AATTATGATG ATATCGAGAT CTACACAGAC GAGAGCCGTA GCAAGGTTGA GATGACCACT
CACCATCTGC GGATGCAGAT AGAACGTGTG GGCAACGACA ACTTCTGTCT CGCCGACTTC
GTCGCGCCGA AAGACTCTGG CGTCGCCGAT TACATGGGTG GCTTCGCCGT CACTGCAGGA
CACGGCATCG ACGAACATGT GGCCCGCTTC GAGGCCAACC ATGACGACTA CAGCGCCATC
ATGCTCAAGT GTCTAGCCGA CCGTCTGGTC GAGGCCTTCG CCGAACGGAT GCACGAGCGG
GTGCGTAAGG AGTTCTGGGG CTACGCCGCC GATGAGAACC TGGATAACGA GGCGCTGATC
CGCGAGAAAT ACAAGGGCAT ACGTCCGGCC CCCGGTTACC CCGCCTGCCC GGATCACACA
GAGAAAGGCC TGCTGTGGGA GCTACTAAAG CCCGACGAGA CCATAGATCT CAAGATCACC
GAGAGCTACG CCATGTTCCC CACCGCCGCT GTCTCCGGCT GGTACTTCGC CCACCCGCAG
TCGCGCTACT TCGGCGTGAC CAATATCGGC CGGGATCAGG TAGAGGACTA CGCCAAGCGC
AAAGGAATGA GTGTCGAGGA GACAGAGCGC TGGTTGGCAC CGGTACTCGA TTATGATGTT
TAA
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| Protein sequence | MATQSPVRNV RQINDAIRAR LNKEILILDG AMGTMIQNHK LEEADFRGER FKQWPCDLKG
NNDLLVLTQP ELIKQIHRDY LLAGADIIET NTFNATQVAM ADYEMQELSR EINLEGARLA
RTACDEVAAE SGRQCYVAGV LGPTNRTCSI SPDVNDPGYR NIHFDDLVEA YIESTQALIE
GGADIIMVET IFDTLNAKAA LFAIETLFDQ LGQRLPVMIS GTITDASGRT LTGQTTEAFY
NSLRHVKPLS IGLNCALGPQ ELRPYVEELS KIAECYVSAH PNAGLPNEFG GYDETPEQMA
EVIGPWAEEG LLNIIGGCCG TTPDHIKAIR AAVIKHGARE LPDLPVACRL SGLEPLTIDA
DSLFVNVGER TNVTGSAKFL RLIKTGEYEE ALSVARDQVE NGAQIIDINM DEGMLDGVEV
MQKFLNLIAS EPDISRVPIM IDSSKWEVIE AGLKCIQGKG VVNSISLKEG EAKFIEQATL
VKRYGAAAII MAFDEVGQAD TMARKIEICT RAYRVLVDKV GFPPEDIIFD PNIFAIATGI
DEHDNYAVDF IEATREIKRT LPHAMISGGV SNVSFSFRGN NPVREAIHAV FLYHAIQAGM
DMGIVNAGQL AIYDDIDPDL KARVEAVVQN LPCPVQGSNN TEQLLEIAEQ YRGDGAAGAK
KEDLEWRSWP VNKRLEHALV KGITEFIDQD TEEARQLASR PLDVIEGPLM DGMNVVGDLF
GSGKMFLPQV VKSARVMKKA VAYLNPYIEA EKVEGESNGK ILMVTVKGDV HDIGKNIVGV
VLACNGYEVV DLGVMVPVEK IIEVAKAEKV DIIGMSGLIT PSLDEMVHNV KAFHKAGLNI
PSIIGGATCS KIHTAVKIAP HAPEGAIYIA DASRAVPMVA KLINKETRQA TIDAAYEEYR
VMRDKRNSQA KRKQIVSLEA ARENRCQQDW NAHTPFVPNQ LGRQVFDDYP LEDLVDRIDW
TPFFRSWELH GHFPKILDDE VVGEEARKLY QDAKAMLKTI IDEKWLTAKA VIGLFPANTV
NYDDIEIYTD ESRSKVEMTT HHLRMQIERV GNDNFCLADF VAPKDSGVAD YMGGFAVTAG
HGIDEHVARF EANHDDYSAI MLKCLADRLV EAFAERMHER VRKEFWGYAA DENLDNEALI
REKYKGIRPA PGYPACPDHT EKGLLWELLK PDETIDLKIT ESYAMFPTAA VSGWYFAHPQ
SRYFGVTNIG RDQVEDYAKR KGMSVEETER WLAPVLDYDV
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