| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0678 |
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| Symbol | |
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| ID | 4923908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 772995 |
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| End bp | 773516 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162211 |
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| Product | protoporphyrinogen oxidase |
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| Protein accession | YP_001092809 |
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| Protein GI | 127511612 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG4635] Flavodoxin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.103464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGCAAAA TATTAATCAT CTATTCCAGT GTGCATGGGC AGACCCGTAA GCTGTGCGAT
TTCATGCAGC GCGAGCTCGA GGCGCTGGAA CATAGTGTCA CCTGCGCCAG CATAGACAAC
CCGCCCGCTA TGGAAGGGTT CGATAAGATA GTCCTGGGCG CCAGCATTCG TCACGGCAAG
CATAATCCCA GGGTGTACGA CTTCATTCGC GAGAACATCA AGGTGCTGCA GGAGAAGGCC
AGCAGTTTCT TTTCGGTGAG CCTGGTGGCG CGCAAGCCCG CCAAGAATAC CCCTGAGACC
AACCCGTACA TGCAGGCGTT TCTGGCCAAG TCGCCCTGGC AGCCAAAGCT GCTGGCGGTG
TTTGGTGGTA ACCTGGATTA TCAGGGTTAT AACGCCCTGG ATCGCAACAT CATACGCTTC
ATCATGTGGA TCACTAAGGG GCCGACGGCG CCGGATACCA AGGTCGAGTA CACCGACTGG
GACAAGGTGA AGCACTATGC TCAGCAGGTC GACGCGCTCT AG
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| Protein sequence | MSKILIIYSS VHGQTRKLCD FMQRELEALE HSVTCASIDN PPAMEGFDKI VLGASIRHGK
HNPRVYDFIR ENIKVLQEKA SSFFSVSLVA RKPAKNTPET NPYMQAFLAK SPWQPKLLAV
FGGNLDYQGY NALDRNIIRF IMWITKGPTA PDTKVEYTDW DKVKHYAQQV DAL
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