| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0656 |
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| Symbol | |
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| ID | 4922610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 743996 |
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| End bp | 745531 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162189 |
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| Product | anaerobic nitric oxide reductase transcription regulator |
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| Protein accession | YP_001092787 |
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| Protein GI | 127511590 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.13158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAA GTCAAACCCA ATTAACGCGG ATGGCGTTAG ATATCACCTC GGGATTGTCC
AATCATGACA GGTTCTCACG CCTGCTCGAC ACCATCAGGG AAAGCATGCA GTGCGACGCC
GCCGCGCTGC TGGAGTTTAA GGGTCAGCAG TTTACCCCAT TGGCCATCAA TGGCCTGAGC
CCAGATGTTC TGGGCCGCCG CTTCGTGCTC CACGAACACC CAAGGCTAGA GGCCATCGCC
CGCGCCGGTG ATGTGGTGCG CTTTCCCGCC GACAGCGATC TGCCCGATCC TTACGACGGC
CTGATCCCCA ATCAGGGGGA CAACCTCACG GTACACGCCT GTATCGGCCT GCCACTGCTC
GCCGATGGCA GCCTGATAGG CGCCGTCACC ATAGATGGCT TCGATCCGGA TCAGTTTAAG
TCTTTCACCA ACGAGCAGCT TAGGGGGATC AGTGCCATCG CCTCGGCGTC GCTCAACAAC
GCCCTGCTGA TCGACAAGCT GGAGAAGCAG GCGCTGCAGG CCCAATGGGA TAAGGGTGAC
AGCACTAGCC AGAGTAAGGA AGGCACCAAG GAGATCATCG GCCAGTCACA GGTGATGAAC
AACCTCAAGC AGGAGATCGC CGTGGTGGCG CCAACGGATC TCAACGTACT CATCATGGGC
GAGACAGGCA CAGGTAAGGA GTTGATCGCC CATGAGATCC ACCAAGGCTC CATGCGCGCC
AGCCAGCCGC TGGTCTACCT CAACTGCGCC GCCCTGCCCG AATCTGTGGC CGAGAGTGAG
CTGTTCGGTC ATGTCAAAGG GGCCTTTACC GGCGCCGTCA GCAACCGCAG CGGTAAGTTC
GAGATGGCCG ATAAGGGCTC GCTGTTTCTC GATGAGATAG GCGAGCTGCC GCTGACCCTG
CAGGCCAAAC TACTCAGGGT GCTGCAATAT GGCGATCTGC AAAGAGTCGG CGACGATCGC
AGCCTCAAGG TGGATGTGAG GATCATCGCC GCCACCAACA AGAATCTGAA GAACGAGGTG
CTGGCGGGAC GCTTTCGCGC CGACCTCTAC CACAGACTCA GCGTCTTCCC GCTGATCGCG
CCGCCACTGA GAGAACGTGA GCAGGACATT ACCCTGCTGA GCGGCTTCTT CGTCGAGCGC
TGCCGTCAGC AACTTGGGCT ACAGACACTA AGGCTCAGCC CGACCAGTCT TGCCATGCTG
GAGTGCTACC AATGGCCCGG TAACGTCAGG GAACTGGAGC ACAGCATCTA CCGAGCGGCC
ATTCTGGCGA GGGCCCAGTC GTCCGGCAGT AACGGCGTCA TCAACCCCGA GCATTTCGAG
TTCGCCAACC AGGCACCGCG CGCCGTCCAA AGCAGCGGTA AAACCCTGGC GCCGCAATTT
AGCGGCAGCC TCAAGCAGGC GACCGAAGCC TTTCAGGCCG ACTACATACG TCAAACCCTG
AGCCAGCACG ATAATAACTG GGCCGCCACC GCCAGGGATC TCGAGGTCGA TTCGGGTAAT
TTACACCGCC TGGCAAAACG GATAGGGTTA AAGTAA
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| Protein sequence | MALSQTQLTR MALDITSGLS NHDRFSRLLD TIRESMQCDA AALLEFKGQQ FTPLAINGLS
PDVLGRRFVL HEHPRLEAIA RAGDVVRFPA DSDLPDPYDG LIPNQGDNLT VHACIGLPLL
ADGSLIGAVT IDGFDPDQFK SFTNEQLRGI SAIASASLNN ALLIDKLEKQ ALQAQWDKGD
STSQSKEGTK EIIGQSQVMN NLKQEIAVVA PTDLNVLIMG ETGTGKELIA HEIHQGSMRA
SQPLVYLNCA ALPESVAESE LFGHVKGAFT GAVSNRSGKF EMADKGSLFL DEIGELPLTL
QAKLLRVLQY GDLQRVGDDR SLKVDVRIIA ATNKNLKNEV LAGRFRADLY HRLSVFPLIA
PPLREREQDI TLLSGFFVER CRQQLGLQTL RLSPTSLAML ECYQWPGNVR ELEHSIYRAA
ILARAQSSGS NGVINPEHFE FANQAPRAVQ SSGKTLAPQF SGSLKQATEA FQADYIRQTL
SQHDNNWAAT ARDLEVDSGN LHRLAKRIGL K
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