| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0646 |
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| Symbol | |
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| ID | 4920599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 735195 |
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| End bp | 736091 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162179 |
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| Product | SAF domain-containing protein |
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| Protein accession | YP_001092777 |
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| Protein GI | 127511580 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.361703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAA AATCAATTGA CTTCAATTGG GTGCTGCTAG TTATTGCCTT GATCTTAGGT
GGTATTTCGG CCTGGGCGAC CAAGAACTAC TTCATAGCCA AAGAGCAGGA ACTCAGAGAT
GAGTTAACCA AGGACAACAT TGCCATGGCC GACGTCATCG TCGCCACCCA GCCTCTGAAA
AAGGGCGACA TCATCTCCCA GGCCAACATG TCGGTACGTC AGATCCGCGC CGATACCCTG
CCTCTGGACG CCATACATCC CAGCCGCTTC GGCGAGGTTG CCGGGCAGAT GCTGCTACAA
CCCATGGCAC CGGGTCGCCC GCTGATCGAG ACCTATCTGC CCGGCATGCG CGTGGCGCAG
TTCTCCGACA TTCTTAAAGA GGGCCAACGT GCCGTCACCA TAGATATCGA TGAGATTAAC
TCGAGTGCCG GCATGCTGGT GCCCTCGGAT CATATCGATC TGCTGCTCTC CTTCAAAGAA
GAGGGACGCA ATGGCGAGCG AAAACGACTC CAGCTGCTAC TGGAGGATGT CACTGTGCTG
GCCACAGGCA GACGCAGCAT AGATGTCAAC CCCGAGTTGG TCGACACCCT ATACGACAAC
CCCAACGCCT ATAACACAGT CACTCTGGCG CTATCGGTCA ACGACGCGGC GCGCGTCTCA
CTGGCAAAAC AGAAAGGCGA TTTCGTCACC CTGCTGAGAA ACCAGAAGGA GTCTAGCGCG
CTGGAGTTTA TCTCTATGCA TGAAGGCCAG CTGTTTAATC GCGAAGAGGA AAACCACGAG
CTTGCCGTTG AGGTGATCAC CGGTGGCAGT GGCATCAAGA CCAGTACCCA AACCTACCCG
CTTCCCAAAG AGATGCTAGA GCAACTCAGC CAACAAAAAG ATAAAGCCGT ACTATGA
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| Protein sequence | MKLKSIDFNW VLLVIALILG GISAWATKNY FIAKEQELRD ELTKDNIAMA DVIVATQPLK
KGDIISQANM SVRQIRADTL PLDAIHPSRF GEVAGQMLLQ PMAPGRPLIE TYLPGMRVAQ
FSDILKEGQR AVTIDIDEIN SSAGMLVPSD HIDLLLSFKE EGRNGERKRL QLLLEDVTVL
ATGRRSIDVN PELVDTLYDN PNAYNTVTLA LSVNDAARVS LAKQKGDFVT LLRNQKESSA
LEFISMHEGQ LFNREEENHE LAVEVITGGS GIKTSTQTYP LPKEMLEQLS QQKDKAVL
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