| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0625 |
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| Symbol | |
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| ID | 4924250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 709149 |
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| End bp | 710876 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162158 |
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| Product | spermidine synthase |
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| Protein accession | YP_001092756 |
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| Protein GI | 127511559 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.415321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCAA CACACACCAC AACGCCTGCT CCTGCAGGCG TTAAATCATT AAGCTGGTTC
GACGATCTCC TGCTGCTGGG GATCATGGCG GTACTGGCCG CCTGTGGCCT CATCTACGAA
TACTTGCTGT CCCACTATGC GGGGCGGATC CTGGGGGCCC TGGAAGCCGC CATCTACACA
ATGATCGGCC TGATGATAGT CTCCATGGGC GTCGGCGCCT TCGCCGCGCG TAAGATCCGC
TGCGCCTTCA CCGGCTTCGC CATGCTGGAG CTGTGCGTCG CCCTCTGCGG CGCCCTGGCG
ATTCTGATCA CCGCCGCCGT GATCGGCTTC GGCCAACAGC TGCCCATCAT CATCGCCAGC
ACCATAGGCT TGCCGCCGGA TCAGTTGCCC CAGGGCGGCT TTATCGGCAC GCTGCAGAAG
CTGAGTGAAT ACCTGCCCTA CGCCTGGGGC GTATTGCTCG GCCTGATGAT AGGCATGGAA
ATCCCCCTGA TCGCCCGGGT ACGTCAGTCA CTTTGTGACG AGCACCTAAT GCATAACGCA
GGCACCATCT ATGGCGCCGA CTATATAGGT GCCGGCGTCG GCGCCGCCAT CTGGGTGATC
TTCATGCTGG CGCTGGATAT CCAGCTGGCC GCGGCGCTCA CCGCCAGCTT TAACCTGCTG
GCCGGCTTCC TGTTTATCTG GCGTTTCTGG TCCAAGATCC GCTTTAACCG ACTGTTATTG
GCAGGCCATC TGCTCGCCAC TGGTATATTG CTGGTACTGG CCATTCATGG CCCCAAGTGG
GATCAGGCCT TCAACAATCT GCTCTACAAG GACAAGGTGG TCTATGCCAA GGCGACCCGT
TTTCAGCAGC TCACCTTTAC CGAGCGTCTG CGGGGCAATC ACCTGGCGCC TGTCTACTCT
CTGTATATCA ACGGCCGCCT GCAGTTCTCC AGCCAGGATG AGCATATCTA TCACGCCTTC
CTGGTACACC CGACGCTGGC CGCCAGTGCC CGTCACGATA AGGTGTTGAT CATAGGGGGC
GGCGACGGAC TTGGACTGAG GCAGGTGCTC AAGTGGCAAC CCAAGCAGGT CACCCTGATG
GATCTCGACG CGGATCTGGT GAGGCTGTTC AAGGAGGGCG ACCCAGAGAT GCCGCCGCGA
CTATCAAACG CGCTGTTAAA GCTTAATGGC GATGCCTTTA ACGATGCGCG GGTCGAGCTG
CTGATAGACG ATGCCTTTAA CGGCGCCGAC AAGCTAATAA GGCGCGGCGA GAAGTTTGAC
GCCATTATCG TGGATCTACC CGACCCCAGC CATCCGGATC TCAACAAGCT TTATTCGGAT
CTCTTCTATC GCAAGCTCAA GGAGCTGCTG AGCAGCGACG GGGCGATCTC GGTGCAGTCG
ACCTCCCCCT ATCACGCCGC CAAGGCCTTC ATCTCGGTCG GTAAGACGCT GCAAGCCGCA
AGCTTTCAAG TTGAGCAGTA TCACCACAAT GTGCCCAGTT TCGGCGAATG GGGCTGGAGC
ATAGGCACCC TAAGGGGCCA AAACGCCAAG CAGCGGCTGT CGAGTATGAC AGAGCTGCCG
GTCGATGACC CCTGGCTCAC GCCTGGGCTT ATCAGGGCGG CTTTTGAATT TCCTAAAAAT
TATTATGAAC ATGCAGACCA GGTGAAGGTC AACGATATAG GCTCAATGCA TCTGTATCGC
TACCATCAGC GCGCCTGGTC AGAGGATGAA AACCTGACGC TCGACTGA
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| Protein sequence | MQSTHTTTPA PAGVKSLSWF DDLLLLGIMA VLAACGLIYE YLLSHYAGRI LGALEAAIYT
MIGLMIVSMG VGAFAARKIR CAFTGFAMLE LCVALCGALA ILITAAVIGF GQQLPIIIAS
TIGLPPDQLP QGGFIGTLQK LSEYLPYAWG VLLGLMIGME IPLIARVRQS LCDEHLMHNA
GTIYGADYIG AGVGAAIWVI FMLALDIQLA AALTASFNLL AGFLFIWRFW SKIRFNRLLL
AGHLLATGIL LVLAIHGPKW DQAFNNLLYK DKVVYAKATR FQQLTFTERL RGNHLAPVYS
LYINGRLQFS SQDEHIYHAF LVHPTLAASA RHDKVLIIGG GDGLGLRQVL KWQPKQVTLM
DLDADLVRLF KEGDPEMPPR LSNALLKLNG DAFNDARVEL LIDDAFNGAD KLIRRGEKFD
AIIVDLPDPS HPDLNKLYSD LFYRKLKELL SSDGAISVQS TSPYHAAKAF ISVGKTLQAA
SFQVEQYHHN VPSFGEWGWS IGTLRGQNAK QRLSSMTELP VDDPWLTPGL IRAAFEFPKN
YYEHADQVKV NDIGSMHLYR YHQRAWSEDE NLTLD
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