Gene Shew_0615 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0615 
Symbol 
ID4922051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp697679 
End bp700858 
Gene Length3180 bp 
Protein Length1059 aa 
Translation table11 
GC content58% 
IMG OID640162148 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001092746 
Protein GI127511549 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.381714 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAAAG CAAGTGAAGT TCTGACTGGT CGTTACGACT CAGCTACCCT AGATGAGCTA 
TTTACAGCGA TCACCAACAA CTATATTGTC GACGAAGAGC AGTACCTCTC TGAACTGATT
AAGCTTGTTC CCTCGAGCGA CGACGAGATT CAACGTATTA CCAAGCGTGC CCACGACCTG
GTGCACAAGG TGCGTCAATA CGACAAGAAA GGACTCATGG TCGGTATCGA CGCCTTCCTA
CAACAGTACA GCCTGGAGAC CCAAGAAGGG ATCATCCTCA TGTGTCTGGC CGAGGCCCTG
CTGCGTATCC CTGATGCGGC CACCGCCGAC GCCCTGATCG ACGACAAACT CTCGGGCGCC
AAGTGGGACG AGCACCTGAG CAAAAGTGAC TCTACCCTGG TTAACGCCTC TACCTGGGGC
CTGATGCTCA CGGGTAAGAT CATCTCCCTG GACAAGAGCA TAGACGGCAA GCCAAGCAGC
CTGCTGAATC GTCTGGTCAA CCGCCTGGGT GAGCCTGTGA TCCGCCAAGC CATGCTGGCG
GCGATGAAGA TCATGGGTAA ACAGTTCGTA CTGGGCCGTA CGGTCCAAGA GGCACTGAAG
AACAGCACTG ACAAGCGCAA GCTGGGCTAC ACCCACAGCT ACGACATGCT GGGCGAAGCC
GCCCTGACCA TGAAAGACGC GCAGAAGTAC TACCAAGATT ACTCCAATGC CATCGCGGCA
CTGGGCGCCC AGCAATACGA TGAGAGCGAG GCGCCACGCC CGACTATCTC TATCAAGCTA
TCGGCGCTGC ACCCTCGCTA TGAGGTGGCC AACGAAGACA GAACCATGAC AGAGCTGTAT
GACACGCTCA TAAAATTGGT GTCTCAGGCG CGTAGCCTTA ACGTAGGCGT CTCTATCGAT
GCCGAAGAGG TAGACCGTCT CGAGCTGTCG CTGAAACTCT TCCAGAAGCT GTATAACTCA
GACGCCGCCA AGGGCTGGGG CCTGCTGGGT CTCGTGGTAC AAGCTTACTC TAAGCGCGCC
CTCCCCGTGC TGTGCTGGAT CACCCGTCTG GCCAAAGATC AGGGCGATGA GATCCCTGTC
CGCCTGGTGA AAGGCGCCTA CTGGGACAGC GAGCTGAAAT GGGCTCAGGT TGCCGGCGAA
GGCGGATACC CGCTGTTCAC CCGCAAGGCA GGAACCGACG TCTCTTACCT GGCCTGTGCG
CGCTACCTGC TGTCTGACGC CACCCGCGGC GCCATCTACC CGCAGTTTGC CAGCCACAAC
GCCCAGACAG TGGCCGCCAT CACCGACATG GCCGGCGACC GTCTGTATGA GTTCCAGCGC
CTACACGGCA TGGGCGAAGA GCTGTACGAC ACCCTGCTGG CCGAGAGCGG CGTAAGCACG
GTTCGTATCT ACGCCCCTGT AGGTGCTCAC AAAGATCTGC TGCCTTACCT GGTGCGTCGC
CTGCTGGAAA ACGGCGCCAA CACCTCGTTC GTACACAAGC TGGTCGACCC TAAGACACCG
ATCGAATCTT TGGTTGTCCA CCCATTGACG ACCCTACAAA GCTATAAAAC CCTAGCCAAC
AATAAAATCG TTCAGCCGAT CGACATCTTC GGCGCCGAGC GTAAAAACTC CAAGGGAATC
AACATGAACA TCATCTCAGA ATCTGAGCCT TTCTTCGCCG CGCTGGACAA GTTCAAAGAC
CAGCAATGGT CTGCCGGCCC TATCGTCAAT GGCGAAACCC TCAGCGGTGA AACCATTGAG
GTGAAGAGCC CATACGACAC CACACAGATC GTCGGCAAGG TCGCCTTCGC CAACAATCAG
GCGATCGAGC AGGCTCTGGC CAGCGCCCAC AACGCCTTCG GCAGCTGGTG CTCAACCCCG
GTTGAAGTAC GTGCCAACGC ACTACAGAAG CTGGCGGATC TGCTTGAAGA GAACCGCGAA
GAGCTGATCG CCCTCTGTAC CCGTGAAGCG GGTAAGAGCA TTCAAGACGG CATCGACGAG
GTGCGCGAGG CGGTCGATTT CTGTCGCTAC TACGCGGTAC AAGCCAAGAA GATGATGGGC
AAGCCTGAAC TGCTGCCTGG CCCAACGGGT GAGCTGAACG AGCTATTCCT GCAAGGCCGC
GGCGTATTCG TCTGTATCAG CCCGTGGAAC TTCCCACTGG CGATCTTCCT AGGTCAGGTC
ACCGCAGCCC TGGCGGCGGG TAACACTGTG GTTGCCAAAC CTGCCGAGCA GACCTCTATC
GTAGGTTACC GCGCAGTGCA GCTGGCCCAT GAAGCCGGTA TTCCGAAAGA AGCCCTGCAG
TTCCTACCAG GTACGGGTGC AACCGTTGGC GCGACCATCA CGGCCGATGA GCGTATCGGC
GGCGTCTGCT TTACCGGCTC TACCGTGACC GCTAAGCGCA TCAACCTGAC ACTGGCCCAG
CGTGATGGCG CCATCATCCC GCTGATCGCC GAGACAGGTG GTCAGAACGC CATGGTGGTG
GACTCGACTT CACAGCCAGA GCAGGTGGTT AACGACGTGG TTTCCTCTTC GTTCACCAGC
GCCGGTCAGC GTTGTTCGGC CCTGCGCGTG CTCTATCTAC AGGAAGATAT CGCCGATCGC
GTGATCGACG TGATGAAGGG CGCCATGGAC GAGCTGACCA TAGGCAACCC AGGTTCGGTG
AAGACAGATG TTGGCCCTGT GATCGATGCG ACCGCCAAGG CGAACCTCAA CGCCCACATC
GACCATATCA AGCAGGTGGG TCGTCTGATC AACCAGCTGG AACTGCCAGC AGGCACCGAG
AATGGTCACT TCGTGGCGCC GACTGCGGTA GAGATCGACT CTATCAAGGT GCTGGAGAAG
GAACACTTCG GTCCTATCCT GCACGTGATC CGCTACAAGG CAGCCGACCT GCCTAAGGTG
ATCGACGACA TCAACTCCAC CGGTTTCGGT CTGACCCTGG GCATCCACAG CCGCAACGAG
GGCCATGCCC TGGAAGTGGC CGACAAGGTC AACGTGGGTA ACGTCTACAT CAACCGTAAC
CAGATCGGCG CCGTAGTTGG CGTGCAGCCG TTCGGCGGCC AAGGCCTGTC GGGCACGGGT
CCTAAGGCCG GTGGTCCACA CTACCTGACC CGTTTCGTCA CCGAGAAGAC GCGCACCAAC
AACATCACCG CCATCGGCGG TAACGCCACC CTGCTTTCTC TGGGTGACAG CGAAGAGTAA
 
Protein sequence
MFKASEVLTG RYDSATLDEL FTAITNNYIV DEEQYLSELI KLVPSSDDEI QRITKRAHDL 
VHKVRQYDKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDAATAD ALIDDKLSGA
KWDEHLSKSD STLVNASTWG LMLTGKIISL DKSIDGKPSS LLNRLVNRLG EPVIRQAMLA
AMKIMGKQFV LGRTVQEALK NSTDKRKLGY THSYDMLGEA ALTMKDAQKY YQDYSNAIAA
LGAQQYDESE APRPTISIKL SALHPRYEVA NEDRTMTELY DTLIKLVSQA RSLNVGVSID
AEEVDRLELS LKLFQKLYNS DAAKGWGLLG LVVQAYSKRA LPVLCWITRL AKDQGDEIPV
RLVKGAYWDS ELKWAQVAGE GGYPLFTRKA GTDVSYLACA RYLLSDATRG AIYPQFASHN
AQTVAAITDM AGDRLYEFQR LHGMGEELYD TLLAESGVST VRIYAPVGAH KDLLPYLVRR
LLENGANTSF VHKLVDPKTP IESLVVHPLT TLQSYKTLAN NKIVQPIDIF GAERKNSKGI
NMNIISESEP FFAALDKFKD QQWSAGPIVN GETLSGETIE VKSPYDTTQI VGKVAFANNQ
AIEQALASAH NAFGSWCSTP VEVRANALQK LADLLEENRE ELIALCTREA GKSIQDGIDE
VREAVDFCRY YAVQAKKMMG KPELLPGPTG ELNELFLQGR GVFVCISPWN FPLAIFLGQV
TAALAAGNTV VAKPAEQTSI VGYRAVQLAH EAGIPKEALQ FLPGTGATVG ATITADERIG
GVCFTGSTVT AKRINLTLAQ RDGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSSFTS
AGQRCSALRV LYLQEDIADR VIDVMKGAMD ELTIGNPGSV KTDVGPVIDA TAKANLNAHI
DHIKQVGRLI NQLELPAGTE NGHFVAPTAV EIDSIKVLEK EHFGPILHVI RYKAADLPKV
IDDINSTGFG LTLGIHSRNE GHALEVADKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG
PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDSEE