Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0615 |
Symbol | |
ID | 4922051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 697679 |
End bp | 700858 |
Gene Length | 3180 bp |
Protein Length | 1059 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162148 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001092746 |
Protein GI | 127511549 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.381714 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAAAG CAAGTGAAGT TCTGACTGGT CGTTACGACT CAGCTACCCT AGATGAGCTA TTTACAGCGA TCACCAACAA CTATATTGTC GACGAAGAGC AGTACCTCTC TGAACTGATT AAGCTTGTTC CCTCGAGCGA CGACGAGATT CAACGTATTA CCAAGCGTGC CCACGACCTG GTGCACAAGG TGCGTCAATA CGACAAGAAA GGACTCATGG TCGGTATCGA CGCCTTCCTA CAACAGTACA GCCTGGAGAC CCAAGAAGGG ATCATCCTCA TGTGTCTGGC CGAGGCCCTG CTGCGTATCC CTGATGCGGC CACCGCCGAC GCCCTGATCG ACGACAAACT CTCGGGCGCC AAGTGGGACG AGCACCTGAG CAAAAGTGAC TCTACCCTGG TTAACGCCTC TACCTGGGGC CTGATGCTCA CGGGTAAGAT CATCTCCCTG GACAAGAGCA TAGACGGCAA GCCAAGCAGC CTGCTGAATC GTCTGGTCAA CCGCCTGGGT GAGCCTGTGA TCCGCCAAGC CATGCTGGCG GCGATGAAGA TCATGGGTAA ACAGTTCGTA CTGGGCCGTA CGGTCCAAGA GGCACTGAAG AACAGCACTG ACAAGCGCAA GCTGGGCTAC ACCCACAGCT ACGACATGCT GGGCGAAGCC GCCCTGACCA TGAAAGACGC GCAGAAGTAC TACCAAGATT ACTCCAATGC CATCGCGGCA CTGGGCGCCC AGCAATACGA TGAGAGCGAG GCGCCACGCC CGACTATCTC TATCAAGCTA TCGGCGCTGC ACCCTCGCTA TGAGGTGGCC AACGAAGACA GAACCATGAC AGAGCTGTAT GACACGCTCA TAAAATTGGT GTCTCAGGCG CGTAGCCTTA ACGTAGGCGT CTCTATCGAT GCCGAAGAGG TAGACCGTCT CGAGCTGTCG CTGAAACTCT TCCAGAAGCT GTATAACTCA GACGCCGCCA AGGGCTGGGG CCTGCTGGGT CTCGTGGTAC AAGCTTACTC TAAGCGCGCC CTCCCCGTGC TGTGCTGGAT CACCCGTCTG GCCAAAGATC AGGGCGATGA GATCCCTGTC CGCCTGGTGA AAGGCGCCTA CTGGGACAGC GAGCTGAAAT GGGCTCAGGT TGCCGGCGAA GGCGGATACC CGCTGTTCAC CCGCAAGGCA GGAACCGACG TCTCTTACCT GGCCTGTGCG CGCTACCTGC TGTCTGACGC CACCCGCGGC GCCATCTACC CGCAGTTTGC CAGCCACAAC GCCCAGACAG TGGCCGCCAT CACCGACATG GCCGGCGACC GTCTGTATGA GTTCCAGCGC CTACACGGCA TGGGCGAAGA GCTGTACGAC ACCCTGCTGG CCGAGAGCGG CGTAAGCACG GTTCGTATCT ACGCCCCTGT AGGTGCTCAC AAAGATCTGC TGCCTTACCT GGTGCGTCGC CTGCTGGAAA ACGGCGCCAA CACCTCGTTC GTACACAAGC TGGTCGACCC TAAGACACCG ATCGAATCTT TGGTTGTCCA CCCATTGACG ACCCTACAAA GCTATAAAAC CCTAGCCAAC AATAAAATCG TTCAGCCGAT CGACATCTTC GGCGCCGAGC GTAAAAACTC CAAGGGAATC AACATGAACA TCATCTCAGA ATCTGAGCCT TTCTTCGCCG CGCTGGACAA GTTCAAAGAC CAGCAATGGT CTGCCGGCCC TATCGTCAAT GGCGAAACCC TCAGCGGTGA AACCATTGAG GTGAAGAGCC CATACGACAC CACACAGATC GTCGGCAAGG TCGCCTTCGC CAACAATCAG GCGATCGAGC AGGCTCTGGC CAGCGCCCAC AACGCCTTCG GCAGCTGGTG CTCAACCCCG GTTGAAGTAC GTGCCAACGC ACTACAGAAG CTGGCGGATC TGCTTGAAGA GAACCGCGAA GAGCTGATCG CCCTCTGTAC CCGTGAAGCG GGTAAGAGCA TTCAAGACGG CATCGACGAG GTGCGCGAGG CGGTCGATTT CTGTCGCTAC TACGCGGTAC AAGCCAAGAA GATGATGGGC AAGCCTGAAC TGCTGCCTGG CCCAACGGGT GAGCTGAACG AGCTATTCCT GCAAGGCCGC GGCGTATTCG TCTGTATCAG CCCGTGGAAC TTCCCACTGG CGATCTTCCT AGGTCAGGTC ACCGCAGCCC TGGCGGCGGG TAACACTGTG GTTGCCAAAC CTGCCGAGCA GACCTCTATC GTAGGTTACC GCGCAGTGCA GCTGGCCCAT GAAGCCGGTA TTCCGAAAGA AGCCCTGCAG TTCCTACCAG GTACGGGTGC AACCGTTGGC GCGACCATCA CGGCCGATGA GCGTATCGGC GGCGTCTGCT TTACCGGCTC TACCGTGACC GCTAAGCGCA TCAACCTGAC ACTGGCCCAG CGTGATGGCG CCATCATCCC GCTGATCGCC GAGACAGGTG GTCAGAACGC CATGGTGGTG GACTCGACTT CACAGCCAGA GCAGGTGGTT AACGACGTGG TTTCCTCTTC GTTCACCAGC GCCGGTCAGC GTTGTTCGGC CCTGCGCGTG CTCTATCTAC AGGAAGATAT CGCCGATCGC GTGATCGACG TGATGAAGGG CGCCATGGAC GAGCTGACCA TAGGCAACCC AGGTTCGGTG AAGACAGATG TTGGCCCTGT GATCGATGCG ACCGCCAAGG CGAACCTCAA CGCCCACATC GACCATATCA AGCAGGTGGG TCGTCTGATC AACCAGCTGG AACTGCCAGC AGGCACCGAG AATGGTCACT TCGTGGCGCC GACTGCGGTA GAGATCGACT CTATCAAGGT GCTGGAGAAG GAACACTTCG GTCCTATCCT GCACGTGATC CGCTACAAGG CAGCCGACCT GCCTAAGGTG ATCGACGACA TCAACTCCAC CGGTTTCGGT CTGACCCTGG GCATCCACAG CCGCAACGAG GGCCATGCCC TGGAAGTGGC CGACAAGGTC AACGTGGGTA ACGTCTACAT CAACCGTAAC CAGATCGGCG CCGTAGTTGG CGTGCAGCCG TTCGGCGGCC AAGGCCTGTC GGGCACGGGT CCTAAGGCCG GTGGTCCACA CTACCTGACC CGTTTCGTCA CCGAGAAGAC GCGCACCAAC AACATCACCG CCATCGGCGG TAACGCCACC CTGCTTTCTC TGGGTGACAG CGAAGAGTAA
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Protein sequence | MFKASEVLTG RYDSATLDEL FTAITNNYIV DEEQYLSELI KLVPSSDDEI QRITKRAHDL VHKVRQYDKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDAATAD ALIDDKLSGA KWDEHLSKSD STLVNASTWG LMLTGKIISL DKSIDGKPSS LLNRLVNRLG EPVIRQAMLA AMKIMGKQFV LGRTVQEALK NSTDKRKLGY THSYDMLGEA ALTMKDAQKY YQDYSNAIAA LGAQQYDESE APRPTISIKL SALHPRYEVA NEDRTMTELY DTLIKLVSQA RSLNVGVSID AEEVDRLELS LKLFQKLYNS DAAKGWGLLG LVVQAYSKRA LPVLCWITRL AKDQGDEIPV RLVKGAYWDS ELKWAQVAGE GGYPLFTRKA GTDVSYLACA RYLLSDATRG AIYPQFASHN AQTVAAITDM AGDRLYEFQR LHGMGEELYD TLLAESGVST VRIYAPVGAH KDLLPYLVRR LLENGANTSF VHKLVDPKTP IESLVVHPLT TLQSYKTLAN NKIVQPIDIF GAERKNSKGI NMNIISESEP FFAALDKFKD QQWSAGPIVN GETLSGETIE VKSPYDTTQI VGKVAFANNQ AIEQALASAH NAFGSWCSTP VEVRANALQK LADLLEENRE ELIALCTREA GKSIQDGIDE VREAVDFCRY YAVQAKKMMG KPELLPGPTG ELNELFLQGR GVFVCISPWN FPLAIFLGQV TAALAAGNTV VAKPAEQTSI VGYRAVQLAH EAGIPKEALQ FLPGTGATVG ATITADERIG GVCFTGSTVT AKRINLTLAQ RDGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSSFTS AGQRCSALRV LYLQEDIADR VIDVMKGAMD ELTIGNPGSV KTDVGPVIDA TAKANLNAHI DHIKQVGRLI NQLELPAGTE NGHFVAPTAV EIDSIKVLEK EHFGPILHVI RYKAADLPKV IDDINSTGFG LTLGIHSRNE GHALEVADKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDSEE
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