| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0607 |
|---|
| Symbol | |
|---|
| ID | 4922676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 685873 |
|---|
| End bp | 686445 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640162140 |
|---|
| Product | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
|---|
| Protein accession | YP_001092738 |
|---|
| Protein GI | 127511541 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.819324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA GATATGTAAT GGTGCACGAC GAGAACCGCT GCATCGGCTG TCAGGCCTGT
AGCGTCGCCT GTCGCAGCGA AAATGGCGTC CCCGAGGGAG TCACCCGCTT GCAAGTGCGC
GTAGAAGGCC CCTTCGGCGA TGCGCCGCAC CTGCACTTTA AATATAACCG CGTCTCCTGC
CAGCAGTGTG AGAACGCCCC CTGCGTCACC GTCTGTCCGA CGGGTGCGGC CTATGTGGGC
GACGATGGCC TGGTCTCCAT CAAGGAAGAT AAATGCGTCG GCTGTATGTA CTGTGTGGCG
GCCTGCCCCT ACAAGGTGCG TTTCATCAAC CCTGAAACCA AGGCGGCCGA CAAGTGTAAC
TTCTGTAAGG ACACCCGCCT GGCCCGCGGC GAGCTGCCCG CCTGTGTGAC CGTGTGTCCC
ACAGATGCAC TGACCTTTGG CGATGCCAAT GACCCGAGCA GCGAGGTAGC CAAACTCATC
AACACCAAAG CGACCTATCA GGAGAAGACC CATCTGGGGA CCAAGCCTAG GGTCTATCGC
ATTCCAACGA AACGTGGGGG GATACAGTCA TGA
|
|---|
| Protein sequence | MSKRYVMVHD ENRCIGCQAC SVACRSENGV PEGVTRLQVR VEGPFGDAPH LHFKYNRVSC
QQCENAPCVT VCPTGAAYVG DDGLVSIKED KCVGCMYCVA ACPYKVRFIN PETKAADKCN
FCKDTRLARG ELPACVTVCP TDALTFGDAN DPSSEVAKLI NTKATYQEKT HLGTKPRVYR
IPTKRGGIQS
|
|---|
| |