| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0604 |
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| Symbol | |
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| ID | 4920972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 682776 |
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| End bp | 684251 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162137 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001092735 |
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| Protein GI | 127511538 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.631555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA CCTCCCTGGG GTTATCCGCC CCCATACTCA AAGCTGTAGC CGACAAAGGT
TATCAAACCC CCTCGCCCAT CCAGGCCCAG GCTATCCCAG CAGTATTGTC GGGTAAAGAT
GTGATGGCGG CGGCGCAGAC AGGCACGGGC AAGACAGCCG GCTTTACTCT GCCACTACTG
GAACTACTCA GCCAGGGCCC TCGCGCCCGC AGCAAACAGG TACGCGCCCT GGTCTTGACG
CCAACCCGCG AACTGGCGGC CCAGATCGCA GAAAGCGTCA CCACCTATGG TCAGCATCTG
CCGCTTCGCA GCGCAGTAGT GTTCGGCGGT GTCGGCATCA GCCCACAGAT CAGTCAACTT
AAACGCGGCG TAGATATCCT GGTGGCCACA CCGGGCCGCC TGTTGGATCT CTATCAGCAA
GATGCCGTGA GCTTCTCTCA GCTGGAGACA CTGGTGCTGG ATGAGGCCGA CCGCATGCTG
GACATGGGCT TTATTCACGA CATCAAGAAG ATCCTCGCCA TCTTACCGCC CAAGCGGCAG
AACCTGATGT TTTCCGCCAC CTTCTCCGAT GAGATCCGTA CCCTGGCCAA GGGGCTGGTG
AACAATCCGG TGGAGATCTC GGTCACCCCG CGCAACAGCA CAGCCAACAC GGTACAGCAG
CTGATCTGCC CGGTAGACAA GAACAAGAAA TCCGCAGCCT TGGTCAAGCT TATCCAGCAA
GGTGACTGGC AACAGGTCTT GGTATTTAGC CGTACCAAAC ATGGCGCCAA CCGTCTGGCT
AAGCATCTCG AGGCCAAGGG GATCACCGCC GCAGCCATCC ACGGTAACAA GAGTCAGGGT
GCCCGCACCA AGGCGCTGGC TAACTTTAAG TCGGGCGACG TGCGCGTGCT CGTAGCCACC
GACATCGCCG CCCGTGGTCT GGATATCGAC CAGCTGCCTC AAGTGGTCAA CTTCGACCTG
CCTAACGTGC CCGAAGACTA TGTGCACCGC ATCGGTCGTA CCGGCCGCGC GGGCGCCGAT
GGCAAAGCGG TCTCCCTAGT GAGCGACGAA GAAGCCAAAC TGCTGGCAGA TATCGAGCGC
CTGATCGGCA AGCTGCTGCC GCGTGCTGAA GTAGAGGGCT TCGAGCCGAC ACACACCCTG
CCCGAGACCA ACCTGACGCC TAAGCGCCAC GGCCAGCACA AGGGACCGCG TAATCCTAAG
CCTAAAAGCA ACAGCCAACG CAGCAGCAAT CGCTCAAGCA ACGGCCAGAG GTCAGATAAG
GCTGGACAGC CTCGCCGAGG CGATCAAGCT CAGGGCAACA AAGAGGGTCA GGGCCGTCGC
CGAACAGGCG CAAGTACTGG TACCAGCAAG CCTGCGAGCG AAGGTCAACA AGCGCAAAAC
CAAGGCAAGC AAGAGCATAG GGACGGTAAC GCCCCAGCCC GCCGCCGCAG ACGTCGTCGC
CCTAGCCAGG GCACGCCTAA ACCGGCCACT AATTAG
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| Protein sequence | MSFTSLGLSA PILKAVADKG YQTPSPIQAQ AIPAVLSGKD VMAAAQTGTG KTAGFTLPLL
ELLSQGPRAR SKQVRALVLT PTRELAAQIA ESVTTYGQHL PLRSAVVFGG VGISPQISQL
KRGVDILVAT PGRLLDLYQQ DAVSFSQLET LVLDEADRML DMGFIHDIKK ILAILPPKRQ
NLMFSATFSD EIRTLAKGLV NNPVEISVTP RNSTANTVQQ LICPVDKNKK SAALVKLIQQ
GDWQQVLVFS RTKHGANRLA KHLEAKGITA AAIHGNKSQG ARTKALANFK SGDVRVLVAT
DIAARGLDID QLPQVVNFDL PNVPEDYVHR IGRTGRAGAD GKAVSLVSDE EAKLLADIER
LIGKLLPRAE VEGFEPTHTL PETNLTPKRH GQHKGPRNPK PKSNSQRSSN RSSNGQRSDK
AGQPRRGDQA QGNKEGQGRR RTGASTGTSK PASEGQQAQN QGKQEHRDGN APARRRRRRR
PSQGTPKPAT N
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