| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0598 |
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| Symbol | |
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| ID | 4921019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 676581 |
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| End bp | 677987 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162131 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_001092729 |
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| Protein GI | 127511532 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.255467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTCAAT CTGACGCTAC TACGCCAAGC GGGGCTTTTG ACAGTCTGCC GCTTAACCCC
GCTTTGCTCG ATACCCTGAA ATCTATCGGC TTTCACCAGA TGACGCCTAT TCAGGCCCAG
AGTCTGCCTG CCATCCTCAA TGGGCAGGAC GTCATAGGCC AGGGCAAGAC GGGCTCGGGC
AAGACAGCCG CCTTCGGTTT AGGCCTGCTC AACAAGCTGG ATGTGAAGCG TTTTCGTATC
CAGACGTTAG TACTTTGTCC TACCCGTGAG CTGGCGGATC AGGTAGCGGC AGAGCTTCGC
ACCCTGGCGC GCGGTATCCA CAACATCAAG ATCCTTACCC TGTGTGGTGG CGTGCCCATG
GGGCCGCAGA TAGGCTCGTT GGAACACGGC GCCCACATTA TCGTCGGCAC GCCGGGTCGT
ATCATAGATC ACCTGGACAG AGGCCGCTTG GATCTCGACA ACGTCGATAC TTTGGTGCTG
GATGAGGCGG ATCGCATGCT GGAGATGGGC TTTCAGCGTG AGCTGGACGC CATCATGCAA
GAGGTGCCCC GTGAGCGTCA GACCCTGCTG TTTAGTGCCA CCTTCCCCGA GCAGATCCAA
GGGCTTAGCG AGCAGTTCAT GATCGATCCC CTCATGGTGA AGGTCGAGGT ACAGCACGGC
GGCGAGAGCA TCGAGCAGCA CTTCTACGAG TGCGGCAACA ACAACGATCG CATGAAGGCG
CTGCAGCTTC TGCTGCTTAA ACATCAGCCC GAGAGCGCCG TGGTTTTCTG TAACACCAAG
CGTGAGACCA AGGATGTGGC GGCTAAGCTG ACCAATGCCG GTTTCAGCGT GGTGGCCCTG
CATGGGGATC TGGAACAGCG GGATCGCGAC CAAATGCTGC TCAAGTTTGC CAACAAGAGC
GCCAGCGTCA TGGTGGCCAC CGATGTGGCG GCCCGCGGCC TGGATATCGA CGCCCTGGAC
ATGGTGGTCA ACTACCATAT GGCCTATGAC ACTGAGGTGC ATATCCACCG CATCGGCCGC
ACCGGCCGCG CTGGCAGCAA GGGCGCCGCC CATACCCTCT TTAACCACGA AGATGGCTAC
AAATTATCCC TGCTGGCAGA TGCACTTGGC CGCGAGATAG ACGGTGAGGC GCTGCCCGGT
GAAGCCCTGC TGGACACCAT GCCGCCTCAA CCCAGAATGG TCACCATTCA GATCGACGGC
GGCAAGAAGC AGAAGGTGCG TCCGGGCGAT ATCCTCGGCT GTCTTACCGG TGACAACGGC
ATAGAGGGTA GTGAAGTCGG CAAGATCAAG ATCACTGAGT TCCGCTCCTA CGTGGCGGTG
GATCGCAAGG TGCTGCGCAA GGCACTTAAC AAGATCGTCA AGGGTAAGCT CAAGGGTAAG
AGTTACCGGG CGTGGGAGTT AAAGTAA
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| Protein sequence | MSQSDATTPS GAFDSLPLNP ALLDTLKSIG FHQMTPIQAQ SLPAILNGQD VIGQGKTGSG
KTAAFGLGLL NKLDVKRFRI QTLVLCPTRE LADQVAAELR TLARGIHNIK ILTLCGGVPM
GPQIGSLEHG AHIIVGTPGR IIDHLDRGRL DLDNVDTLVL DEADRMLEMG FQRELDAIMQ
EVPRERQTLL FSATFPEQIQ GLSEQFMIDP LMVKVEVQHG GESIEQHFYE CGNNNDRMKA
LQLLLLKHQP ESAVVFCNTK RETKDVAAKL TNAGFSVVAL HGDLEQRDRD QMLLKFANKS
ASVMVATDVA ARGLDIDALD MVVNYHMAYD TEVHIHRIGR TGRAGSKGAA HTLFNHEDGY
KLSLLADALG REIDGEALPG EALLDTMPPQ PRMVTIQIDG GKKQKVRPGD ILGCLTGDNG
IEGSEVGKIK ITEFRSYVAV DRKVLRKALN KIVKGKLKGK SYRAWELK
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