| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0587 |
|---|
| Symbol | |
|---|
| ID | 4920882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 664811 |
|---|
| End bp | 665698 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640162120 |
|---|
| Product | phosphoribulokinase |
|---|
| Protein accession | YP_001092718 |
|---|
| Protein GI | 127511521 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3954] Phosphoribulokinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.537809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTA AACACCCCAT TATTGCCGTA ACCGGCTCCT CTGGAGCGGG CACCACGACG
ACCACGACAG CATTTAGCCA TATCTTCCGT CAGTTGGGGA TCAATGCCGC GATGATCGAG
GGCGACAGCT TTCACCACTA CACGCGTCCC GAGATGGAAC TGAAGATCCG TCAGGCACAG
AACGAGAACC GCAACATCAG CTATTTCGGC CCCGAGGCCA ACGATTTTGG CAAGCTGGAG
CAGTGCTTTA GCGACTATAG CGCCACAGGT CAGGGCGAGA CCCGCTCCTA CCTGCACACC
TTCGACGAGG CCGTGCCCTT CAACCAGATG CCCGGCACCT TCACCCAGTG GCGACCGCTG
CCGGAAAACA CCGACATGCT CTATTACGAA GGCTTACACG GCGGCGTGGT AACCGATGAC
TGCGACGTGG CCCAGCACGT GGACCTGCTG ATCGGCATGG TGCCCATAGT TAACCTGGAG
TGGATCCAGA AGATCATCCG CGATACCTCA GACAGAGGCC ACAGCCGCGA GAAGGTGATG
GGCTCTATCG TGCGCAGCAT GGAAGACTAT ATCAACCATA TGACGCCGCA GTTCTCCCGC
ACCCATATCA ACTTCCAGCG GGTCCCTACG GTAGACACCT CTAACCCCTT CAGCGCCAAG
ACCATCCCCA GCCTGGATGA GAGCTTCGTG GTGATCCGTT TTCGTGGCAT CAAGAACGTC
GACTTCCCCT ATTATCTGAA GATGATCGAT GGCTCCTTCA TGTCGCGCAT CAACACCCTG
GTGGTGCCCG GCGGCAAGAT GTCGCTGGCG ATGGAGCTGA TCCTTACCCC GCTGATTCGG
GATCTGCTGG AGAAGCGTCA GCACCTGTTG GATCTGGATA GCGAATAA
|
|---|
| Protein sequence | MSAKHPIIAV TGSSGAGTTT TTTAFSHIFR QLGINAAMIE GDSFHHYTRP EMELKIRQAQ
NENRNISYFG PEANDFGKLE QCFSDYSATG QGETRSYLHT FDEAVPFNQM PGTFTQWRPL
PENTDMLYYE GLHGGVVTDD CDVAQHVDLL IGMVPIVNLE WIQKIIRDTS DRGHSREKVM
GSIVRSMEDY INHMTPQFSR THINFQRVPT VDTSNPFSAK TIPSLDESFV VIRFRGIKNV
DFPYYLKMID GSFMSRINTL VVPGGKMSLA MELILTPLIR DLLEKRQHLL DLDSE
|
|---|
| |