Gene Shew_0585 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0585 
Symbol 
ID4920946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp662616 
End bp663251 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content50% 
IMG OID640162118 
ProductcAMP-regulatory protein 
Protein accessionYP_001092716 
Protein GI127511519 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000009188 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.481967 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTGA TTGGTAAGCC TAAACCTGAT CCAACGTTGG AATGGTTTTT ATCACACTGT 
CACATTCATA AGTACCCAGC CAAAAGCACT CTGATCCATG CGGGTGAAGA CTCTGACACG
CTGTACTACA TAGTGAAGGG TTCTGTTGCC GTCTTGATTA AAGATGAAGA AGGCAAAGAG
ATGATCCTCT CTTACCTGAA CCAAGGTGAC TTCATCGGTG AATTGGGTCT GTTTGAAGAG
CAAGCCGAGC GTACCGCTTG GGTTCGTGCC AAGCAAGCCT GTGAAATCGC TGAGATCTCT
TACAAGAAAT TTAAGCAGCT GATCCAGGTT AACCCTGAGA TCCTGATGAA GCTCTCTTCT
CAGATGGCTT ACCGTCTGCA AAGCACCAGC CAGAAAGTGG GCGATCTTGC CTTCCTGGAC
GTTGCCGGTC GTATCGCGCA GACGCTACTG CACCTGGCTA AGCAACCAGA CGCCATGACC
CATCCAGACG GCATGCAGAT CAAGATCACT CGCCAAGAGA TTGGTCAGAT CGTGGGCTGT
TCTCGCGAAA CCGTGGGCCG TATCCTCAAG ATGCTTGAAG AGCAGAATCT GATCCAAGCA
CACGGCAAAA CTATCGTGGT TTACGGTACC CGCTAA
 
Protein sequence
MALIGKPKPD PTLEWFLSHC HIHKYPAKST LIHAGEDSDT LYYIVKGSVA VLIKDEEGKE 
MILSYLNQGD FIGELGLFEE QAERTAWVRA KQACEIAEIS YKKFKQLIQV NPEILMKLSS
QMAYRLQSTS QKVGDLAFLD VAGRIAQTLL HLAKQPDAMT HPDGMQIKIT RQEIGQIVGC
SRETVGRILK MLEEQNLIQA HGKTIVVYGT R