| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0569 |
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| Symbol | |
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| ID | 4923177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 644958 |
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| End bp | 645836 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162102 |
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| Product | HflC protein |
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| Protein accession | YP_001092700 |
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| Protein GI | 127511503 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000254764 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.126336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAGAT TATCTGTTAT TATTGCGGCC ATCTTAGTCG CTATGGGTCT ATCGTCCCTG
ATGGTGGTCA ACGAGGGTGA ACGCGCTATC GTGTCGCGCT TTGGTAAGAT CATCAAAGAT
GAGGGGGTAA CCCGCATCTA TAAGCCGGGT CTGCATATCA AGCTGCCGGT GATCGATAAG
ATCAAGTATC TCGACTCTCG CATCCAGACC ATGGATGGCG CGGCGGATCG TTTCGTCACC
TCAGAGAAGA AAGACTTGAT GGTCGACTCT TACGTGAAGT GGCGCATCAA AGATCACGAG
AAGTACTATC TCGCGACCAA TGGTGGTAAT AAGGTTCAGG CGGAGTCTCT GCTTCAGCGT
AAGATCAACA ACGACCTGCG TACCGAGTTT GGTCGTCGTA CCATTAAGGA TATCGTCTCT
GGTAGCCGCG ATGAGCTGCA GCAAGATGCG CTTCGAAATG CCTCTGATAG CGCCCAGGAT
CTGGGTATCG AGGTGGTCGA CGTGCGTGTT AAGCAGATCA ACCTGCCTGC CAACGTGAGC
TCTAGCATCT ACCAGCGTAT GCGCGCCGAG CGTACCGCTG TGGCGAAAGA GCACCGCGCT
CAGGGTAAGG AGCAGTCTGA GATCATTCGT GCCAAGACAG ACGCCAGCGT GACCATTCAG
ATCGCAGAAG CCGAACGTAA GGCGTTGCAG GTGCGTGGTG AGGGGGATGC CATCGCAGCT
AAGATCTACG CCGATGCTTA TAAGAAGGAC CCTGAGTTCT TCTCTTTCCT GCGTAGTCTT
GAGGCTTATC AGGCGAGTTT CGGTAACGGT TCTAACGTTA TGGTGCTCGA GCCGGAAGGT
GATTTCTTCA AGTATATGAA GAGCGCCGAC GCGAAATAG
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| Protein sequence | MGRLSVIIAA ILVAMGLSSL MVVNEGERAI VSRFGKIIKD EGVTRIYKPG LHIKLPVIDK
IKYLDSRIQT MDGAADRFVT SEKKDLMVDS YVKWRIKDHE KYYLATNGGN KVQAESLLQR
KINNDLRTEF GRRTIKDIVS GSRDELQQDA LRNASDSAQD LGIEVVDVRV KQINLPANVS
SSIYQRMRAE RTAVAKEHRA QGKEQSEIIR AKTDASVTIQ IAEAERKALQ VRGEGDAIAA
KIYADAYKKD PEFFSFLRSL EAYQASFGNG SNVMVLEPEG DFFKYMKSAD AK
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