| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0568 |
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| Symbol | |
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| ID | 4922569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 643813 |
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| End bp | 644955 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162101 |
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| Product | HflK protein |
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| Protein accession | YP_001092699 |
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| Protein GI | 127511502 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01933] HflK protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0118849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.240164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTGGA ACGAGCCCGG TAACAAGGGT CAAGACCCTT GGGGAAACAA GAACGGCAAT
GACAAGGGGC CGCCAGATCT CGACGAAGTA TTTAAGAATA TTTCGAAGCG TTTTGGGGGT
AAAGGAAATG GCGCTGGCGG TGGATTCAGC GCGCTAGGTT TTATCATTGT ATTAGGCATC
GCCGTTGTCG TATGGGGCCT GTCAGGTTTC TATACGGTGA AAGAAGCCGA AAAGGGTGTG
GCGCTACGCT TTGGCAAGTA TATTGGCCAA GTGGAGCCGG GCCTACAGTG GAAGGCGACC
TTCATCGATG AAGTCTTCCC AGTGAACGTG AGCAACGTTC GCTCAATTCC AGCCTCGGGC
AGCATGCTCA CCGCCGACGA GAACGTCGTC CTGGTGGAGC TGGATGTACA GTATATTGTG
GTCGATGCCT ATCGCTACCT GTTTAGCGCG GTCGATGCCA ATTCGAGCCT ACGTGAGGCT
ACCGATAGCG CGCTGCGTTA TGTGGTGGGC CACAACAAGA TGGACGATAT CCTGACCACA
GGTCGTGATC AGATCCGTCG TGACACCTGG GAAGAGGTCG AGCGCATCAT CAAGCCTTAT
AACCTGGGCA TAGAGATCCG CGACGTGAAC TTCTTGCCGG CCCGTCCGCC GGAAGAGGTG
AAAGACGCCT TTGATGACGC TATCGCCGCA CAGGAAGATG AGCAACGTTT CATTCGTGAA
GCCGAAGCCT ATTCTCGTGA AGTCGAGCCT AAGGCTCGCG GTACGGTGCA GCGCATGGAG
CAGCAGGCGA ACGCCTATAA AGAGCGTGAG ATCCTAGAGG CTCGCGGTAA GGTGGCTCGC
TTCGAGAAGC TGTTGCCTGA ATATAAGGCG GCGCCGGAAG TGACGCGTGC TCGTCTCTAC
ATAGATGCCA TGTCTAATGT CCTCTCGGGT ACCAACAAGG TGCTGGTGGA TTCGAAGGCG
GGCAACAACA TGATGTATCT GCCACTGGAT AAGTTAATGG AGCAGCGTCC ACAGACCAAG
ACCAGCAAGC CTGTCGAGGC AGACTCGGTC AATGACTCAG TTAACAGCAT AGTAAATAGT
GTTGGCATGC CGTTAGATGG AAGGCCTTCT CGTAGCGACC GCACTCGCCA GGGGAGAAAC
TAA
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| Protein sequence | MAWNEPGNKG QDPWGNKNGN DKGPPDLDEV FKNISKRFGG KGNGAGGGFS ALGFIIVLGI
AVVVWGLSGF YTVKEAEKGV ALRFGKYIGQ VEPGLQWKAT FIDEVFPVNV SNVRSIPASG
SMLTADENVV LVELDVQYIV VDAYRYLFSA VDANSSLREA TDSALRYVVG HNKMDDILTT
GRDQIRRDTW EEVERIIKPY NLGIEIRDVN FLPARPPEEV KDAFDDAIAA QEDEQRFIRE
AEAYSREVEP KARGTVQRME QQANAYKERE ILEARGKVAR FEKLLPEYKA APEVTRARLY
IDAMSNVLSG TNKVLVDSKA GNNMMYLPLD KLMEQRPQTK TSKPVEADSV NDSVNSIVNS
VGMPLDGRPS RSDRTRQGRN
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