| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0565 |
|---|
| Symbol | miaA |
|---|
| ID | 4922048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 641153 |
|---|
| End bp | 642079 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640162098 |
|---|
| Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| Protein accession | YP_001092696 |
|---|
| Protein GI | 127511499 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.131349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.226401 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAGCG AGAGTCAGCC GACAATTATC ACCCTGATGG GGCCGACGGC GTCGGGTAAG
ACAGCGCTCG CGATGGCATT GGCCGAGCAG CATAACTGCG AGATCATCTC GGTCGACTCG
GCGCTCATCT ATCGGGACAT GGATATTGGC AGCGCCAAAC CGACCCAGGA AGAGCTAAGC
CGCGCGCCGC ACCGTTTGAT CGATATTCGC GATCCCAGTG AGAGCTATTC GGCGGCGGAT
TTTCGCAGCG ATGCTATTGC CAATATCGAA GCGATCCTCG CTGCGGGCAA GACGCCTCTG
TTGGTGGGCG GTACCATGCT CTACTTTAAG GCGCTACTCG AAGGCCTGTC GCCATTGCCA
TCGGCAGATG AGGCGATTCG GGCCGAGATA GCCAAAGAGG TCGAAGCCAA AGGCTGGCAG
GCGCTACATG ACGAGCTGCG TCAGATTGAC CCTGTATCGG CTGATCGGAT CCACCCTAAC
GATCCCCAGC GTCTGTCGCG GGCGATCGAG GTGTACCGGA TTAGCGGCAA GAGTCTGACC
GAGTTGACCC AGGTGAAGGC CGAAGCCTTG CCCTATAAGG TGGTGCAATT TGGCATAGCG
CCGAAAGATC GCAAAGTGCT ACACCTTGCT ATAGCAGAAA GATTCAAATT GATGTTAAAT
CAAGGTTTCG TCGAAGAGGT GCAGCGGCTC AAGGCGCGAG CGGATCTGCA TCTAGACCTA
CCTTCGATGA GATGTGTCGG ATATCGCCAG GTGTGGCAGT ATCTCGATGG GGAATATGAC
TATGATACTA TGGTCGAAAA ATCCATAGTT GCGACTAGGC AATTGGCCAA GCGTCAATTA
ACATGGTTGC GAGGATGGGC TGATCTAAAT TGGCTGGAGA GTGGGGATGA ATCTAATCTG
GCGCGACTAT TAGAGCATTG TCGCTAG
|
|---|
| Protein sequence | MNSESQPTII TLMGPTASGK TALAMALAEQ HNCEIISVDS ALIYRDMDIG SAKPTQEELS
RAPHRLIDIR DPSESYSAAD FRSDAIANIE AILAAGKTPL LVGGTMLYFK ALLEGLSPLP
SADEAIRAEI AKEVEAKGWQ ALHDELRQID PVSADRIHPN DPQRLSRAIE VYRISGKSLT
ELTQVKAEAL PYKVVQFGIA PKDRKVLHLA IAERFKLMLN QGFVEEVQRL KARADLHLDL
PSMRCVGYRQ VWQYLDGEYD YDTMVEKSIV ATRQLAKRQL TWLRGWADLN WLESGDESNL
ARLLEHCR
|
|---|
| |