| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0563 |
|---|
| Symbol | |
|---|
| ID | 4922525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 637936 |
|---|
| End bp | 639255 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162096 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_001092694 |
|---|
| Protein GI | 127511497 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000538528 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.250383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGAA CTGAGTCACT AATAAAACGC CTATTATTGA TAGTCTTGCT ATGCATTCCT
TCCGTTGCCT ATAGCGCAAA TAAACTGGAA GGCGTGCGTA TCTGGGCGGC GCCAGAATCC
ACGCGGGTGG TGTTTGACCT GCGCGAGCCG CCAAAATATT CCCACTTCAC CCTCACCAGT
CCCTACCGTT TGGTGGTGGA TCTGACGACC ACGGCTACCG GGCTGGATCT CAATAAGATC
GAGAACAACA GTAAGCTGGT TAAGCGGGTG CGTATCAGCA AGCCGCCCAA GAAGGGCACC
CTTAGGCTAG TGATCGATCT GGTTAAGCCT GCCAAGGCTA ACCTCTTTGC CCTGTCGCCC
ACGGCGCCTT ACGGCAATCG GCTGGTGGTG GATCTTGAAG GGGGCAACCA GAGTCCTAAG
ACGGTAAAGG TCGAGCCTGA GCAGAAGCTT AGGGATATCA TAGTGGCCAT CGATGCCGGC
CATGGCGGCG ACGATCCCGG CTCCATCGGC CCCTCTGGCA TCTATGAGAA GAAGGTGGCG
CTGCAGATAG CCAAGAAGGT GGAGGCCAAG ATCAACGCCA CGCCGGGCAT GCGCGCCATC
ATGACACGTT CCGGTGACTA CTTTGTCAAT CTGAACAAAC GCTCGGAGAT CGCCCGCAAC
AGCAAGGCCG ACCTGCTGGT GTCGATTCAC GCCGACGCCT TTACCTCACC GCAACCACAA
GGAGCCTCTG TGTGGGTGCT GTCGATGCGC CGCGCCAACA GTGAGATTGG TCGTTGGTTA
GAGCAGAAAG AGAAGCACTC AGAGCTGCTG GGCGGTGCCG GTGAGATTAT CCAGAATGCG
GATAACGAGC AGTATCTGGC CATGACCCTG CTGGATATGT CGATGGACAG ATCCATGGCG
ATTAGCCATA ACATCGCCGG AGATGTGCTG GCTAATCTGG GCAAGGTGAC TCGCCTGCAC
AAGCACAAGC CTGAGGCGGC CAGCCTGGCG GTACTCAAGT CGCCGGATAT TCCCTCTATC
CTGGTGGAGA CAGGCTTTAT CTCGAACCAC AAAGAGGAGC GCCTGTTGAC CCAGAGGGAT
CACCAGAACA ATATCGCCAA CGCCGTCCAC AAAGGCGTGG TGCGCTATTT CGAGAATAAT
CCTCCGGCCA ATACCATGAT GGCCAGTAAG AGCGGCATCA AACACAAGGT GACCGCAGGT
GAGTCACTGT CTGTGATCGC CCACCGTTAC CAGGTGTCGG TCGATAGCAT CAAGAAGGCC
AACAAGCTCA AGTCTAATAC CCTCTACATC GGTCAGAAGC TGATCATTCC CCGGGCCTAA
|
|---|
| Protein sequence | MIRTESLIKR LLLIVLLCIP SVAYSANKLE GVRIWAAPES TRVVFDLREP PKYSHFTLTS
PYRLVVDLTT TATGLDLNKI ENNSKLVKRV RISKPPKKGT LRLVIDLVKP AKANLFALSP
TAPYGNRLVV DLEGGNQSPK TVKVEPEQKL RDIIVAIDAG HGGDDPGSIG PSGIYEKKVA
LQIAKKVEAK INATPGMRAI MTRSGDYFVN LNKRSEIARN SKADLLVSIH ADAFTSPQPQ
GASVWVLSMR RANSEIGRWL EQKEKHSELL GGAGEIIQNA DNEQYLAMTL LDMSMDRSMA
ISHNIAGDVL ANLGKVTRLH KHKPEAASLA VLKSPDIPSI LVETGFISNH KEERLLTQRD
HQNNIANAVH KGVVRYFENN PPANTMMASK SGIKHKVTAG ESLSVIAHRY QVSVDSIKKA
NKLKSNTLYI GQKLIIPRA
|
|---|
| |