Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0561 |
Symbol | |
ID | 4921430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 635897 |
End bp | 637375 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640162094 |
Product | carbohydrate kinase, YjeF-related protein |
Protein accession | YP_001092692 |
Protein GI | 127511495 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG0062] Uncharacterized conserved protein [COG0063] Predicted sugar kinase |
TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related [TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0026662 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.240164 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGTTTA GTGACGGGCA GCTACCATCG GCCTTATATA CGGCGCAGAT GATTCGTGAT GCCGAAGCGC GCTTGATCGC GTCCGGTGAG GCTAACTTGT GCCAATTGAT CGACAGCGCC GGACAGTCGG CCTTCGAGTT GCTGCAACGA GAGGGTAAGC TCAATAGTAA AATTCTGGTG TTGGCGGGTT ATGGCAACAA TGGCGCCGAT GCCTATATCT GCGCCACCCT GCTGCTCGAA TCTGGCTGTG ATGTCGCCCT CTATGCGGTG GAGCGTTCTG AGGCGGGCGA GGGGATCAGC TACGCCAAGG CGGCCTTTCT CGCCGCGGGC GGGCATCAGT TATCTGACTA TGAAGAGGCG CTCAAGGAGG CCGAGGTCGT CGTCGATGGC CTGCTAGGCA CGGGTGTCAA GGGTGAGCTA CGTGCCCCCT TTGCCGAGAT GATAGTGGCG ATCAATCGTT ATTCTCCCTG GATCTTATCC TTAGATGTGC CATCGGGTAT CGATGTGGAT ACCGGCGCCG GTCAGCTAGC GGTAAAGGCC GATGTGACCT TGACCTTCGG CGCGCCGAAA CAGGGACTGA TCACGGGTAA GGCCAGGGAC TGTGTTGGCA GGCTCTGGTT TGCCGATATC GGTCTGCAGG AGTATCTGCC AGAGTCTAAG GTGCTTAACA TTGCCCACAG GCTGACGGAC CTCGGATTGC CTGCCAGGGC GCAGAACAGC CACAAGGGGG CCTGCGGTAA GGTGACCGTT ATCGGCGGCG ATATCGGCAT GGCCGGGGCA CCACGTCTGG CTGCCGAGAG CTGTCTGCGG GCGGGCGCCG GACTGGTGGC GGTGATTTCA AGACCCGAGC ATTTGACCGT GGTGAACTCG GGGCGACCGG AAATTATGTT CTGGGGCTGC GAGCTGGTGG ATATGGAAGT GTATCAACGC TTGGGCTGGG CGGATATTCT GCTGATTGGT CCAGGACTGG GTAAACACGA CTGGGGCTAC AACCTGCTTA AGGCGACAGG GCTGAGCGAC AAGTCCTGTG TGATGGACGC CGATGCACTT AATCTGCTGG CGCTCGAGCC TTCACGCCAG AGTAATTGGG TGTTGACCCC TCACAGCGGT GAGGCCGCCA GGTTGTTGGG GATTAGCATC GCCGAGGTGG AGGCGGATCG CTTCGCCGCC GTCTATGCCT TGCAGGCTAA ATATGGCGGC GTGGTGGTGC TCAAGGGCGC AGGCACACTT ATCTATGACG GTAAGGTGTG TCATGTGGCG CCGGTGGGAA ATCCTGGTCT CGCCAGCGGC GGCAGCGGTG ATGTCCTAGG TGGCATCATA GCGGCCTTGA TGGCCCAGGG AATGGCTAAG ATGGAGGCGG CGAGCGCCGG AGTGGTGGTT CATGGGGCCG CAGCGGATCT GGCCGCGAAA GATGGCGAGC GAGGCATGCT TGCCTGCGAT CTGTTTGCTC ACATACGCGC CCTGGTCGAT AAGATTTAG
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Protein sequence | MLFSDGQLPS ALYTAQMIRD AEARLIASGE ANLCQLIDSA GQSAFELLQR EGKLNSKILV LAGYGNNGAD AYICATLLLE SGCDVALYAV ERSEAGEGIS YAKAAFLAAG GHQLSDYEEA LKEAEVVVDG LLGTGVKGEL RAPFAEMIVA INRYSPWILS LDVPSGIDVD TGAGQLAVKA DVTLTFGAPK QGLITGKARD CVGRLWFADI GLQEYLPESK VLNIAHRLTD LGLPARAQNS HKGACGKVTV IGGDIGMAGA PRLAAESCLR AGAGLVAVIS RPEHLTVVNS GRPEIMFWGC ELVDMEVYQR LGWADILLIG PGLGKHDWGY NLLKATGLSD KSCVMDADAL NLLALEPSRQ SNWVLTPHSG EAARLLGISI AEVEADRFAA VYALQAKYGG VVVLKGAGTL IYDGKVCHVA PVGNPGLASG GSGDVLGGII AALMAQGMAK MEAASAGVVV HGAAADLAAK DGERGMLACD LFAHIRALVD KI
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