| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0559 |
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| Symbol | |
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| ID | 4922887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 633209 |
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| End bp | 633754 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162088 |
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| Product | oligoribonuclease |
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| Protein accession | YP_001092690 |
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| Protein GI | 127511493 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.143761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.198605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGCAG ATGAAACAAA TCTGATCTGG GTAGATCTGG AGATGACGGG ACTAGAGCCC
GAGGTCGACA GAATCATTGA GATAGCTACG ATTGTGACCG ACAAGGAGTT AAACATCTTG
GCGGAAGGGC CAGTGATTGC CATCCATCAG AGTGAAGATG TGCTTGCGGC GATGGATGAC
TGGAACCAGA AGCATCACGG CGAGTCGGGT CTGATCGACA GAGTCAGGGC GAGTGATTTT
AGCGAGCAAG ATGCCATCGA GCAGACGATT GCCTTCTTAT CTGAGCATGT ACCTGCCGGT
GTATCGCCAA TGTGCGGCAA CAGCATAGGT CAGGACAGAC GTTTCTTGAA TCGTTACATG
CCGACTTTGG AAGATTATTT CCACTACCGC AACATAGATG TCAGTTCTGT CAAAGAGTTA
GTGCGTCGCT GGAGGCCAGA GGTGATGGAC GGTTTTAAGA AGCAGGGCAC ACATCAGGCA
CTGGTTGATA TCCAGGAATC GATCGCCGAA CTCCGATATT ATCGTGAGAA AGTATTTAAA
ATTTGA
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| Protein sequence | MAADETNLIW VDLEMTGLEP EVDRIIEIAT IVTDKELNIL AEGPVIAIHQ SEDVLAAMDD
WNQKHHGESG LIDRVRASDF SEQDAIEQTI AFLSEHVPAG VSPMCGNSIG QDRRFLNRYM
PTLEDYFHYR NIDVSSVKEL VRRWRPEVMD GFKKQGTHQA LVDIQESIAE LRYYREKVFK
I
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