| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0555 |
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| Symbol | |
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| ID | 4923759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 626928 |
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| End bp | 630110 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162084 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001092686 |
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| Protein GI | 127511489 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0475901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.179203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGTA TATTACTGAT TATTCTCTGT CTAATCTCAT TCTCAGGCGC CGCAAATTCG
CCCCTGAATC TCAACAAACG CCTGGGACTA GGACAGGAGC CTCAGGTCGC CAGCAAGAGC
ACCGCCGAGC AGCTGAGTCT GCTGGAGGAG CAGCTCACCG AGCAACAGGC CCTGCAGTCC
AGCTTCGACG CCATCATTCA CCAGTATCAG AGCCAGAAAC AGGCCCTGAC ACAGCAGCTT
AAAGAAGCCG CCACGCCGCT GGAATACAAC CCTAATCAAG ATCTCAGCCA GCAGGCGTCA
CTCTCCTACC TGAGACTGTC TGAGCTCAAA GAGACAGAGG CTAACCTGGC CACTCAGGTC
AACGAGTTAA TCAAACGCCA GCAACAGCTT CCTAGCCTGA TAAGCCAAGC CAACCTGACC
CTGGCCAAGC ACAAACAGGC GACCAGCAAT GACAACCAGC CCCTGAGCGA GATGCAGCGT
CGCGTCTATG TTCAGAGCCT TTCGACCCTG GAATCTGAGC TGGCCAGCAG CCAGAAACAG
ATCGCCCTGA CCCAACAGCA ACTGGCGCTG GTGCGCAGCC AACTGGTGCA GCAAGAAGCC
CTTATCGAAC GTCTCAACGG CGCCATCGCC GAGCAGCGTC ACAAGGCAAC GGCGGCCACC
ATCGCCGCCA GTCAGATAGA AACCTCCATC ACAGACGATG CCATCGCCAT CAAGTTGAAC
GCGCAGAACC AGGCCTATGG CGAGCAGCTG AAACAGCTGA CCCATGAGGT CACCAATGTG
ATGACACAGC AGGAGCAGGC CGAGACCCAA TACCAGTTCC AGGCCAAGCA GATCACTAAT
ATTCAGCAGC AGATCGCCTT GGTGAAGCTT AACTCGGCCT TCGGCGAGCG CTTCCTGCGT
ATCCTCTACT CACTGCCCAA GCCGCCAAGC CAGGACAAGA TCAGCAATGA GATCGCCAAT
GCCCGTCTGG CCCGCTATCA GATAGAGCAA GACCAGACAC TGCATCCGCT GCTCGGCGCC
GTCGAGCAGC TCACGCCGCT GCAGAGCAAG CTGGTCGGTG CCCAGAAAGA GCTGCAGCGC
CAGCTGCTGG AAAACTATGA TCTCTACCTT GGCGAACTGG CCGAGTTAAG GGTTTTGTAT
GAGCAGCTAG GCCAGCAGTA TCAGACTCTT AAGACCACGC TCAACGAGCA CCTGTTTTGG
GTGGCCAATG CCAACAGCAT AGACGGCTAC TGGCTGGGCG ACCTGTATCA GAGTACCCAA
TGGCTGCTGA CCCAGGCGCC TTGGCATCAG GTACAGGACT CACTAAGCGA ACAGAGCACC
CTCTGGTCCT GGTGGGTGAT CTTGATGGTG CTCTGCCTGG TAATGCAGGA CTTGGTCACA
CCTAAATTTA CTCAGCTGAT GGCGAAGAAC GTCACCTATG TAGGTAACGT CACGCAAGAT
AAGTTTATCT ATAGTTTCAA TACCTTGATT GGCTCGCTGC TCTATAGCTG CATCAAGCCA
CTGCCATTGA TCAGCGGCGG TCTGATCTTC TACTTCAGCA ACCATAACCT GGTCTCCTCG
GTGGGCATGG GCATACTGGC CATAGGCATG CTGTACCAGC TCTATCGCCT CACCTATCTG
CTGGCGCTGG ATAAGGGCTT GTTAATCGGC CACTTCAAGG GCGACAAGGC GATCATACGC
GCCGGTCAGC AACGCCTACG CGCCCTGACC GTACTTGCGA TGCCGATTGT CGGCGTGATC
GGCTTCACCG AGGTGCTAGA AACTTCGCTG GTGCGCAACA GCCTGGGACG CGGCGCCTTC
ATCCTACTGG CCCTCATGCT GTTCTGGTTC TACCGCGACA TGCTGAGCCT GTCGAAGCAG
GAACATCACT ATCACCAGGA CGATAAGAAC AAGCGCTTGC TGCAGAAGCT GCTCTGGTCG
ATACTCATCC TGCTGCCACC AGCCTGTGCC GTGCTGGCCT TCAGGGGCTA CTACTTCACC
GCCTATCAGA TGCTGCTGCA GCTGCAGCTG TCGTTGATCT TATCCCTAAG CTTTATGCTG
CTGTATCAGT TGATTAAGCG CTGGATGCTG ATCGAGCGAC GCCGCATCGC CTTTAACCGC
GCCAAGGCCA AGCGCGCCGA GATCTTGGCC CAGCGGGAGA AAGAAGATGA CCCCAACAGT
AACGAGCCAC CGGACACCTA TGAAGAGCCA GTGGTGGATC TGGAGACCAT CTCCAGCCAG
TCTCTGGGGC TGGTGCGTTC ACTGCTAACG CTGGCCTTCC TGATCAGCCT GATCGGCCTC
TGGACTCAGA CCCATAGCGC CATCTTCTCG TTTCTGGATG GCATCACCCT GTGGACCAGC
TCGAGCACGG TCGACGGCAT CGCCCAGCAG CTCCCTATCA CTCTCAAGTC CCTGCTGCTT
GGCCTTATCA TAGTCGGCTT CTCGCTGATG ATAGCCACCA ACCTGCCAGG TCTGCTGGAG
CTGATGATTC TGCAGCGGCT AGATCTCACC CAGGGCACGG GCTTCGCCAT CACCACTGTG
AGTCGCTATC TGGTGGTCTT CTTCGGTATG CTCAGCGGCT TTTCCACCCT GGGGATGGAG
TGGTCTAAGC TGCAATGGCT GGTCGCGGCG CTCTCGGTGG GCTTGGGTTT CGGCCTGCAG
GAGATCTTCG CCAACTTCAT CTCGGGCCTG ATCATCTTGT TCGAAAAGCC GGTGCGTATC
GGCGATACCG TCACCATTCG CGAGCTGACC GGTACGGTAA GTAAGATCCA GATCCGCGCC
ACCACGATTG TCGACTGGGA CAGAAAAGAG ATAATCGTCC CCAACAAGGC CTTCATTACC
GAGCAGCTGA TCAACTGGTC GCTGTCAGAC CCGATCACTA GGGTGATCGT CTATGTCTCG
GTCGCCAGGG ACTCAGATCC CGCGCGAGTC GAGGCGGCGC TCTATCAGGC GGTTAAGGAG
TGTGACGATG CCCTGACCAC GCCGGAGCCC GAGGTCTGGT TTGCCGGATT TGGTCAGCAT
ACTCAGGACT ACGAGATCCG CGCCTATGCC AAGGATATGA ACACCCGCTG GCCGCTTAGG
CATAAGCTGC ACAAGCAGGT CAGTAAGAAA CTGAGAGAGA ATCATCTGGA GCTCGCCTAT
CCGCAGCTCG AGGTGCATAT TAGTGGTCAA AGTAAAGAGA CTCAGGGGAT AATTAGAAGC
TAA
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| Protein sequence | MSRILLIILC LISFSGAANS PLNLNKRLGL GQEPQVASKS TAEQLSLLEE QLTEQQALQS
SFDAIIHQYQ SQKQALTQQL KEAATPLEYN PNQDLSQQAS LSYLRLSELK ETEANLATQV
NELIKRQQQL PSLISQANLT LAKHKQATSN DNQPLSEMQR RVYVQSLSTL ESELASSQKQ
IALTQQQLAL VRSQLVQQEA LIERLNGAIA EQRHKATAAT IAASQIETSI TDDAIAIKLN
AQNQAYGEQL KQLTHEVTNV MTQQEQAETQ YQFQAKQITN IQQQIALVKL NSAFGERFLR
ILYSLPKPPS QDKISNEIAN ARLARYQIEQ DQTLHPLLGA VEQLTPLQSK LVGAQKELQR
QLLENYDLYL GELAELRVLY EQLGQQYQTL KTTLNEHLFW VANANSIDGY WLGDLYQSTQ
WLLTQAPWHQ VQDSLSEQST LWSWWVILMV LCLVMQDLVT PKFTQLMAKN VTYVGNVTQD
KFIYSFNTLI GSLLYSCIKP LPLISGGLIF YFSNHNLVSS VGMGILAIGM LYQLYRLTYL
LALDKGLLIG HFKGDKAIIR AGQQRLRALT VLAMPIVGVI GFTEVLETSL VRNSLGRGAF
ILLALMLFWF YRDMLSLSKQ EHHYHQDDKN KRLLQKLLWS ILILLPPACA VLAFRGYYFT
AYQMLLQLQL SLILSLSFML LYQLIKRWML IERRRIAFNR AKAKRAEILA QREKEDDPNS
NEPPDTYEEP VVDLETISSQ SLGLVRSLLT LAFLISLIGL WTQTHSAIFS FLDGITLWTS
SSTVDGIAQQ LPITLKSLLL GLIIVGFSLM IATNLPGLLE LMILQRLDLT QGTGFAITTV
SRYLVVFFGM LSGFSTLGME WSKLQWLVAA LSVGLGFGLQ EIFANFISGL IILFEKPVRI
GDTVTIRELT GTVSKIQIRA TTIVDWDRKE IIVPNKAFIT EQLINWSLSD PITRVIVYVS
VARDSDPARV EAALYQAVKE CDDALTTPEP EVWFAGFGQH TQDYEIRAYA KDMNTRWPLR
HKLHKQVSKK LRENHLELAY PQLEVHISGQ SKETQGIIRS
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