| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0553 |
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| Symbol | |
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| ID | 4922615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 624800 |
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| End bp | 625726 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162082 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001092684 |
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| Protein GI | 127511487 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.11535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACACA AGCTACTGCT GCTGACCAGC GATAATGATA GATACCGCAG CCTGCTCGGC
TCCTGTCACC TGCCACACCT GACACTGCTA GGCGACGATC CCCAGAGTAT TCTCGATGCC
GACATCTGGC TCGCCGAACC GCCATTGGCC GCCCCCTTGG TGGGCCATGC CAAACAGATC
AAGTGGATGC AATCTACCTA TGCCGGCGTC GATCTCCTGG TCAAACCCAG GCTGCGCCGC
GACTACCAAC TCACCAATGT GCGGGGGATC TTCGGCCCGC TGATGAGCGA GTACCTGTTT
GGCTACCTGC TGGCCCACCA GCGTCAGCAC AAGCAATATC AGTCACAACA GGCGGAGAAG
ATCTGGCGCC CGGGCAACTT TCGCACCCTG CAGGGGCAGG AACTGCTGCT GTTAGGCACA
GGCAATATCG CCAAACACCT GGCACAGACC GCCAAACATT TCGGCATGCG GGTGACCGGC
ATCAATCGCG GCGCCAAGCC AACCATAGGC TTCGACAGCG TCGACACCCT GGCCAATCTG
GCCCACCACA TAGATAAGGC AGACGCCATC GCCGCCATAC TGCCCAGCAC GCCGCAGACC
CAGGGGGCGC TCAACCAGGA GCTGCTGGCC ATGATGAAGC CGGAGGCGAT CCTCTTCAAT
CTGGGTCGCG GCGACGTGTT GGATCTCGAC GCCCTCTACG CCCAGCTGCT GAGTCATCCC
CAGCAGAACG CTATCCTGGA TGTCTTCAAT CAGGAGCCCC TGCCCCAGGA GCATCCCATC
TGGTCGCTGG AGAATGTCAT CATCACCCCA CATATCGCCG CCCCGAGTTT CCCAGAGCAG
GTGGTGGAGA TCTTCGCCAA TAACTACCAC AAGTTCATCA AGGGAGAGCC CTTGAGCCAT
AAGGTCAACT TCGAGCGCGG CTATTAA
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| Protein sequence | MEHKLLLLTS DNDRYRSLLG SCHLPHLTLL GDDPQSILDA DIWLAEPPLA APLVGHAKQI
KWMQSTYAGV DLLVKPRLRR DYQLTNVRGI FGPLMSEYLF GYLLAHQRQH KQYQSQQAEK
IWRPGNFRTL QGQELLLLGT GNIAKHLAQT AKHFGMRVTG INRGAKPTIG FDSVDTLANL
AHHIDKADAI AAILPSTPQT QGALNQELLA MMKPEAILFN LGRGDVLDLD ALYAQLLSHP
QQNAILDVFN QEPLPQEHPI WSLENVIITP HIAAPSFPEQ VVEIFANNYH KFIKGEPLSH
KVNFERGY
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