| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0551 |
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| Symbol | |
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| ID | 4921913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 621922 |
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| End bp | 624189 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162080 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_001092682 |
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| Protein GI | 127511485 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.243647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATG CGATAGATTT AAGCCTCGAT GGCGTCGAAC AGATGCCCTT GAGACGTTTC
ACCGAAGAGG CGTATCTGAA CTATTCCATG TACGTCATCA TGGATCGCGC CCTGCCGCAT
ATCGGCGATG GCCTAAAGCC GGTGCAGCGC CGTATCGTCT ACGCCATGAG CGAACTTGGC
CTGTCGGCGC AATCTAAGCA CAAGAAGTCG GCGAGAACCG TGGGTGACGT ACTGGGTAAG
TATCACCCTC ACGGCGACAG TGCCTGTTAC GAGGCCATGG TGTTGATGGC GCAGCCTTTC
TCCTACCGCT ACCCACTGGT AGATGGTCAG GGTAACTGGG GCGCGCCGGA CGATCCTAAG
TCATTCGCGG CCATGCGTTA TACCGAGGCG CGCCTGTCTA AGTTCTCCGA GGTGCTGCTG
ACTGAGCTGG GTCAGGGCAC GGTCGATTGG GGGGTCAACT TCGACGGCAC GCTCAAAGAA
CCCATGGTGT TGCCCGCCCG TCTGCCACAT ATCCTGCTCA ACGGCATCAC AGGGATCGCG
GTGGGGATGG CGACCGACGT ACCGCCCCAC AATGCCCGCG AGCTGGTGGA TGCCTGTGTG
GAGCTTATCG ACAACCCCAA GGTGGATCTG GAACGTCTGA TGGAGCTGGT ACCCGGCCCT
GACTATCCCA CCGAGGCGGA GATCATCAGC CCGAGAACCG AGATCGCCAA GATCTACGAG
ACGGGCCGCG GCTCCATCAA GGCCCGCGCC GTTTATAGCG TGGAGTCGGG CGAGATAGTG
ATCACCGCGC TGCCCCATCA GGCCAGTGGC GGTAAGATTT TAGAGCAGAT CGCTGCCCAG
ATGCAGGCCA AGAAGCTGCC CATGGTGGCC GACCTGCGCG ACGAGTCAGA TCACGAAAGC
CCGGTGCGTA TCGTTATCGT GCCTCGCTCA AATCGTGTCG ATTGCGATCA GCTGATGGCG
CACCTGTTTG CCACCACAGA TCTCGAGAAG AATTTCCGCG TCAACCTCAA CGTGCTGGGG
CTCAATGGCC GTCCTCAGGT GAAGGGGCTG AAACAGCTGC TGACCGAGTG GCTGGAGTTC
AGATTGACCA CGGTCAGACG CCGTTTAGAG CACAGATTAG ATAAGGTATT GGCAAGGTTA
CATATTCTTG AGGCCTTGAT GATCGCCTTC CTCAATATCG ATGAGGTGAT CGAGATCATT
CGTTACCACG ATGATCCCAA AGCCGAGCTG ATGTCGCGTT TTAACCTGAC TGACGAGCAG
GCCAATGCCA TCCTGGATCT TAAACTGCGT CACCTGGCGA AGCTGGAAGA GTTTAAGATC
AAGACGGAAC AGAGCGAGCT AGAGGCGGAG CGTGAGAAGC TTGAACTACT GCTGAGCTCA
GATCGCCGCA TGAAGACGCT GATCAAGAAA GAACTTAAGC AAGACGCCGA AACCTATGGT
GATGAGCGTC GCTCGCCGCT TGTCGAGCGT AGCGAATCCC GTGCCCTGTC TGAGCAGGAG
TTGGTACCGG CCGAAGCGGT AACCGTAGTG CTGTCGGAGA AGGGATGGGT ACGCTGTGCC
AAGGGGCATG ATATCGACCC TACGGCGCTC TCCTACAAGG CGGGTGACGG CTTCCTCTGC
GCCGCGTCTG GCAGGAGTAA TCATGCAACC GTCTTTATCG GCTCGACGGG CCGCGCGTTT
GCCACCGATA CCCATACCCT GCCATCGGCC AGGAGTCAGG GTGAGCCTGT GACTACCCGC
TTCCAGCTGT CGCCGGGCGA GTCTATGGCC CATGCGCTGC TCGGAGAGGA TGGACAATGC
TTCCTGCTGG CCTCAGATGC GGGCTACGGC TTTATCGGCG ATTACAAGGA TATGGTATCT
CGCAACAAGG CGGGTAAGGC GCTGTTGAGC CTGCCGGCCA ATGCTCAGGT GCTGCCGCCG
AAACGCGTGG ACAAGAGTCG TAGCGAGTCT ATCTTAGCGA TCACCAACGA GGGGCGCATG
CTGCTCTTCT CCGTCGATGC TTTGCCGCAA CTGGCCAAGG GCAAAGGCAA CAAGATCATC
GGCATCGCCA GTGACAGGGC CAAGAGCCGC GAAGAGCTGC TGGTGCATCT GCATGTAGTG
CCGCAAGATA CCGCAGTTAC CCTGTGGGCG GGTAAGCGTA AGCTTACTCT CAAGCCGAGC
GATCTCGAGC ACTACCGTGG CGAGCGTGGT CGTCGCGGCG CCAAGCTGCC TCGCGGTCTG
CAACGAGTGG ATAAGGTGGA GCTTGGCGAG GACGAGACCA GTCTCTAG
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| Protein sequence | MSDAIDLSLD GVEQMPLRRF TEEAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG
LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSKFSEVLL TELGQGTVDW GVNFDGTLKE PMVLPARLPH ILLNGITGIA
VGMATDVPPH NARELVDACV ELIDNPKVDL ERLMELVPGP DYPTEAEIIS PRTEIAKIYE
TGRGSIKARA VYSVESGEIV ITALPHQASG GKILEQIAAQ MQAKKLPMVA DLRDESDHES
PVRIVIVPRS NRVDCDQLMA HLFATTDLEK NFRVNLNVLG LNGRPQVKGL KQLLTEWLEF
RLTTVRRRLE HRLDKVLARL HILEALMIAF LNIDEVIEII RYHDDPKAEL MSRFNLTDEQ
ANAILDLKLR HLAKLEEFKI KTEQSELEAE REKLELLLSS DRRMKTLIKK ELKQDAETYG
DERRSPLVER SESRALSEQE LVPAEAVTVV LSEKGWVRCA KGHDIDPTAL SYKAGDGFLC
AASGRSNHAT VFIGSTGRAF ATDTHTLPSA RSQGEPVTTR FQLSPGESMA HALLGEDGQC
FLLASDAGYG FIGDYKDMVS RNKAGKALLS LPANAQVLPP KRVDKSRSES ILAITNEGRM
LLFSVDALPQ LAKGKGNKII GIASDRAKSR EELLVHLHVV PQDTAVTLWA GKRKLTLKPS
DLEHYRGERG RRGAKLPRGL QRVDKVELGE DETSL
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