| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0550 |
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| Symbol | |
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| ID | 4921871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 620759 |
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| End bp | 621925 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162079 |
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| Product | L-sorbosone dehydrogenase, putative |
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| Protein accession | YP_001092681 |
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| Protein GI | 127511484 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.123721 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAATA AAAGAGTTAG TTGTTATTTT CTGTGTGCGA TGTTTGCCGT GATGGCATCG
GGCGTGTCCC TGACGGCGCG CGCCGAGCAG CCCATCATGA TCACAGTCAC CAAGGGATTT
GGACTCTCCT TATATGCCTC AGATCTCGGT GATGCCAAAC AGATGGCACT GGGTGACGAA
GGCACCCTGT TTGTGGGCTC TTATAAGTCC GGCACCATAC AGGCCCTGGT AGACAGCAAC
GCCGACGGTC GTGTAGACAA GCGCTACGTA GTTGCCAAGG GGCTGGAGTA CCCAGAGGCG
ATCGCCTTTC ATAAGGGGGA TCTCTATGTT GCCGAAGAGG AGCGCATCCT ACGCTTCGTG
GATATCGAGA ATCGCCTGAA ACGTCCCGGC CGTGGCAAAG AGGTTTACGA CCGTCTGCCG
GGTAAGACCA ACAAGAGCCG CCGCGCCATG CGCTTCGGCC CAGATGGTCG TCTCTATGTT
GCCATAGGCG CTCCCTGTAA CGTGTGTGAG GCTCATGCCC CCTTTGGCAG TATCATTGCC
ATCGACCTAG ACAGTGGTAG CAGTGAGCAG ATCGCCACCG GTATACGCAA CGTCACCGGC
TTCGACTGGG ACCCTAAAGA CAGCAAGTTG TGGTTTGCCG ATTTGGGTCG TGACTGGATG
GGTGACAGAC TGCCACCGGA TGAGATCAAC CGTGTCGATA TCGTCGGCGC CCACTACGGC
TTTCCCTATA TTCACGCCAG CAGCGTGCTG GAACCCGCCT ACGAGAAGCC CAAGGGGCTC
AAGGTCACCA CGCCCGTCTT CGAGTTGCCG GCCCACGTGG CGCCCATGGG GCTCGAGTTT
TACCGTGGCG AGCAATTCCC GGAGAAGTAT CGTGACCAGC TATTCGTGGC CGAGAATGGA
TCATGGAACC GTTCCAGTAA GATCGGCTAT CAGGTCACCA TGTTGACCCT GGAAGATGAC
AGTATCAGCA AGCGCCAGAC GGTGGTGAGC TTTCTCGATG GAGAGTTCCC CGTCGCCCGG
CCCTATGACT TAATCATGGC GCCCGATGGG GCCATGTATA TCTCAGACGA TCTGAAAGGC
AATGTGTATC GTCTGTTTTA TAAAGAGAAC GCGAGCGAAG AGATTGAATC GAGTGAAGCG
AGTGAACAAC AGGATCCTAA TCAATGA
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| Protein sequence | MHNKRVSCYF LCAMFAVMAS GVSLTARAEQ PIMITVTKGF GLSLYASDLG DAKQMALGDE
GTLFVGSYKS GTIQALVDSN ADGRVDKRYV VAKGLEYPEA IAFHKGDLYV AEEERILRFV
DIENRLKRPG RGKEVYDRLP GKTNKSRRAM RFGPDGRLYV AIGAPCNVCE AHAPFGSIIA
IDLDSGSSEQ IATGIRNVTG FDWDPKDSKL WFADLGRDWM GDRLPPDEIN RVDIVGAHYG
FPYIHASSVL EPAYEKPKGL KVTTPVFELP AHVAPMGLEF YRGEQFPEKY RDQLFVAENG
SWNRSSKIGY QVTMLTLEDD SISKRQTVVS FLDGEFPVAR PYDLIMAPDG AMYISDDLKG
NVYRLFYKEN ASEEIESSEA SEQQDPNQ
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