| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0549 |
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| Symbol | |
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| ID | 4921321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 618825 |
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| End bp | 620711 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162078 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_001092680 |
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| Protein GI | 127511483 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.249219 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAACC AATACACTTC AGATGCAATT GAAGTCCTCA ATGGACTCGA CCCGGTAAAA
CGTCGCCCAG GTATGTATAC CGACACCACA CGTCCAAACC ATTTGGGCCA AGAGGTGATC
GATAACAGCG TCGATGAGGC CCTCGCGGGA CACGCGACCA GAATCGACGT GATACTGCAC
AAGGACAATT CGCTGGAGGT GATCGATGAT GGCCGCGGCA TGCCGGTGGA TATCCATCCC
GAAGAGGGGA TCCCCGGGGT CGAGCTGATC CTCACCAAAC TGCACGCAGG TGGTAAGTTC
TCCAATAACA ACTATCAGTT TTCCGGTGGT CTGCACGGCG TAGGTATCTC GGTCGTGAAC
GCGCTGTCGA ATCGTGTCGA GATCACGGTG AGGCGCAGCG GTCAGGTCTA TGAGATGGCC
TTCGAGCATG GCGACAAGGT GGAAGAGCTG ACCGTAACGG GAACCTGTGG TCGACGCAAC
ACCGGCACCC GCGTCCATTT CTGGCCAACC GCCAGCTATT TCGACTCGGT TAACTTCTCG
ATTCCTAAGC TTATCTATCT GCTAAGGGCC AAGGCGGTCC TCTGCCCGGG GCTGCGTATC
AAGTTTACTA ACAAGCAGAC CGGCGATGTC GAAGAGTGGT GCTACGAGAG CGGTCTGACC
GACTATCTCA AGTCGTCGAC GCAAGGTGCA TTGACTCTGC CTGAAGAGCC TTTTATCGGC
AGCATGGCTG GTAATACCGA GGCGGTTGAC TGGGCCATTA CCTGGCTGCC TGAGGGGGGC
GACTCCCTTA ACGAGAGCTA CGTCAACTTG ATCCCGACGC CGCTGGGCGG CACCCATGTT
AACGGTTTCC GTCAGGGTCT GCTGGAGGCG ATGCGTGAAT TTTGTGAGTT TCGTAACCTG
ATCCCCAGAG GGATCAAGCT CTCCCCCGAG GATATCTGGG ATCGCAGCAG CTTCATTCTG
TCGATCAAGA TGCAAGATCC ACAGTTTGCC GGACAGACTA AAGAGAAACT CTCCAGCCGT
CAGAGCGCGG CGTTCGTCTC GGGCATCGTC AGAGACGCCT TCAGTCTCTG GCTCAATACC
CATACGGATC AGGCCGAGGC CCTGGCCGAG ATGTGTATTA GCAACGCCCA GAAACGTCTG
AAGGCGGCCA AGAAGGTCGC GCGTAAGAAG GTGACCTCGG GCCCTGCGCT GCCGGGTAAG
CTGACCGACT GTAGCGGCCA GGATCCTATG CGCGGCGAGC TCTTCCTGGT GGAGGGTGAC
TCCGCGGGCG GTAGTGCCAA GCAGGCGAGG GATCGTGAGT TTCAGGCGAT CATGCCGCTG
CGGGGTAAGA TCCTTAATAC TTGGGAGGTA GAGGCCTCGC AGGTGCTGGC CTCTCAGGAG
GTGCACGACA TCTCAGTGGC CATCGGCTGT GACCCGGACA GCAATGATAT CTCAGAGCTC
AGATACGGTA AGATCTGTAT CCTGGCGGAT GCGGACTCGG ATGGTCTGCA TATCGCGACC
CTACTGTGCG CCCTGTTCAT GAAGCACTAC AAGGTGCTGG TGGAGAAGGG GCACATCTAT
GTGGCCATGC CGCCGCTGTT TAGGGTCGAT GTGGGTAAAG AGGTATACTA CGCGCTGGAT
GAAGCCGAGA AGCAGGGGAT CTTAGATCGT ATCAGCGCCG AGAAGAAGAA GGGTAAGGTG
CAGGTGACCC GATTCAAGGG ATTGGGTGAG ATGAATCCAT TGCAGCTGAG GGAGACCACC
ATGGATCCCA ACACCCGAAG ACTGGTACAG TTAACCATAG ATGATGCCGA GGATACCCTG
GCCATCATGG ATATGTTGCT GGCCAAGAAG CGTTCTGGCG ATCGTAAGAC CTGGCTTGAA
ACCAAAGGCG ACTTAGCCCA GCTATAG
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| Protein sequence | MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATRIDVILH
KDNSLEVIDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNNNYQFSGG LHGVGISVVN
ALSNRVEITV RRSGQVYEMA FEHGDKVEEL TVTGTCGRRN TGTRVHFWPT ASYFDSVNFS
IPKLIYLLRA KAVLCPGLRI KFTNKQTGDV EEWCYESGLT DYLKSSTQGA LTLPEEPFIG
SMAGNTEAVD WAITWLPEGG DSLNESYVNL IPTPLGGTHV NGFRQGLLEA MREFCEFRNL
IPRGIKLSPE DIWDRSSFIL SIKMQDPQFA GQTKEKLSSR QSAAFVSGIV RDAFSLWLNT
HTDQAEALAE MCISNAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV EASQVLASQE VHDISVAIGC DPDSNDISEL
RYGKICILAD ADSDGLHIAT LLCALFMKHY KVLVEKGHIY VAMPPLFRVD VGKEVYYALD
EAEKQGILDR ISAEKKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDAEDTL
AIMDMLLAKK RSGDRKTWLE TKGDLAQL
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