| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0544 |
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| Symbol | tolC |
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| ID | 4921172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 614493 |
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| End bp | 615839 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162073 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001092675 |
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| Protein GI | 127511478 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000576987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.601769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAAA AAGGACAGCT AATGAAATTT AAGATCCGCA CCTTATGTGC AGCGTTGACT
CTCGCGGCAA CGACTTCTGC CGTGCATGCC GACGATCTAC TGCAGATATA TCAGCAGGCC
CTTACCAATG ATCCTATTGC GCTCCAAGCA CAAGCGCAGC GCGACCGTCT CTACGAGCAG
ATCGAAGAGA ACCGCGCCCC CTTGCTACCT ACCATCAGCG CCAGCGTAGG CTATGGAAAG
AGCTGGACCA ATGTTGATGA TGACAAGTAC AACAGCGGAC TCGATGCTGG AGTGTCACTC
AAGCAGGTGA TCTATGATCA CAGCGCCTGG GTCGGACTCG ACCTCGCAGA GCTTGCGGCG
TCACAGGCCG ATGCAGCCTA TGCCTCGACA CTTCAGTCAC TCATCATTCG CGTAACAGGC
GCCTACTTCG ACGTCTTAGC CGCGAAAGAT AACTATGAAT TCAAGGGCGC CGAGAAGCGT
GCCATCGAGC GTCAGCTCGA GCAGACCAAG CAACGTTTTG CCGTGGGTCT CACCGCGATC
ACCGACGTAC ACGAGGCTCA GGCCCAGTAT GACTTGGCCC GTGCATCGGA AATCCTGGCG
GAAAACCAGC TGATCAACAG CTACGAAGCC CTCAGAGAGA TCACCGGCAT AGACCACAAG
TCTATCGACA TTCTGGATAC CACACGTTTC ACCGCGGTAC CGCCAACCCC AGCCATGCCA
AACGACTGGT TGAAGATGGC CGAGACCAGC AGTGTGGATC TGTTAACCAC GCGTATCGGT
AAAGATATCG CCCAGCAGAC CATCTCGCTC TACAAGGCGG GCCACATGCC GTCTCTGAGC
CTGAATGCCG GTTACACCAC CAACCTGAAT CAGAAGAATC AGGCAGGTGA TCTGAGCGAT
TACGACAACG CCAACGTGGG TCTGACCCTG AGCGTGCCAA TCTTCGAAGG CTTTAAGGTG
AGCTCTAAGG TTAACCAGGC GCAATACCAA TACGTAGAAG CCAGCGAGAA GATGGAACAG
ACCTACCGCA AGGTAGTGAA AGATGTGCGT AACAACTTCA ACAACGTTGG CGCCTCTATC
AGCTCTATCC GCGCCTATGA GCAATCGGTG ATCTCTTCTG AGAGTGCACT GAAAGCGACC
CAGGCAGGTT TCGAAGTCGG TACCCGTACC ATCGTTGACG TACTCAACCG TACCCGTGAC
CTGTATGACT CTAAGCGTCA GCTCTCTAAT GCCCGTTATG GCTATATCAA CTCTATCTTG
GCGTTGAAAC AAGCGACTGG CACCCTGAGC GAAGACGATG TCATCGCCAT CAACAATGGC
CTGAAGGCCC CTGAAGTCAG TCAGTAA
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| Protein sequence | MSKKGQLMKF KIRTLCAALT LAATTSAVHA DDLLQIYQQA LTNDPIALQA QAQRDRLYEQ
IEENRAPLLP TISASVGYGK SWTNVDDDKY NSGLDAGVSL KQVIYDHSAW VGLDLAELAA
SQADAAYAST LQSLIIRVTG AYFDVLAAKD NYEFKGAEKR AIERQLEQTK QRFAVGLTAI
TDVHEAQAQY DLARASEILA ENQLINSYEA LREITGIDHK SIDILDTTRF TAVPPTPAMP
NDWLKMAETS SVDLLTTRIG KDIAQQTISL YKAGHMPSLS LNAGYTTNLN QKNQAGDLSD
YDNANVGLTL SVPIFEGFKV SSKVNQAQYQ YVEASEKMEQ TYRKVVKDVR NNFNNVGASI
SSIRAYEQSV ISSESALKAT QAGFEVGTRT IVDVLNRTRD LYDSKRQLSN ARYGYINSIL
ALKQATGTLS EDDVIAINNG LKAPEVSQ
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