Gene Shew_0542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0542 
Symbol 
ID4924132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp612691 
End bp613662 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content55% 
IMG OID640162071 
Producthypothetical protein 
Protein accessionYP_001092673 
Protein GI127511476 
COG category[S] Function unknown 
COG ID[COG5345] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00442686 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.62984 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGTAA CATGGAAACG GGTCAGCCTG GCGGCCGCCG TCTTATTTTT GATTGGCTAC 
ATCATCAGCG TATGGTGGAG CGTAGAGCCA GACAGCATAG AGCCCCATCA GCTCAATAAT
GAGACGGGCC ATAAGATAGT GGGCTACGCG ACCACTACCT CTCTGATTTT GACCATGGAA
ACCCTCCTCG ATAAGAACGG TGGCTGGTTG TCGAACGATG TGATGCCTCC CTCGCTGTTT
ATGGATAACA TGCCCGCCTT CGAGTTTGGC GCCATCGAGC AGGCGCGGGA TCTGGCGCTG
ATCATGCGCA AGGAATTTAG CCGTTCCCAA TCGCAGTCGA CCGCCGACAA AGATCTGCTG
GCGGCCCACT CTAAGCTGAA TATCGAACAC ACCAGTTGGT TAGTGCCGAG CGCCGAGGGC
GAGTATCGTG ACGCCATCAA GCTACTCAAG CTTTATCGTG CCCGCATCGC CGACACCAAT
AATCCCGATG CTCAGTTCTA TGCCCGCGCC GATAACCTCA ACGAATGGCT CAAAGAGGTG
CAGAAGCGCC TGGGTAGCAT GTCTCAGCGC CTGTCTGCCA GTGTCGGCCA GGAGCGGATC
AATACCGATC TCGCCGGTGA CACTGAGGCC AGCCAGTCGA CGCCTAATCT GGCCAGCCAG
GAGATCAAGA CCGGCTGGTG GCAGATAGAC GATGTCTTCT ATGAAACCCG CGGCGCCACC
TGGGCACTGC TGAACTTCAT GAAGGCTATT GAGGTGGATT TCGCCGACGT ATTGAAGAAG
AAAAATGCTG AGGTTAGCTT GCAGCAGATC ATTCGTGAGC TGGAAGAGAC GCAGCAGCCT
GTGTGGAGCC CGATCGTGTT GAACGGTTCA GGGTTTGGCA TAGTGGCCAA CCACTCGCTG
GTGATGGCCA ATTATATTTC CCGCGCCAAT GCCGCGGTGA TCGATTTAAC TAACTTATTG
ACTCAAGGCT AA
 
Protein sequence
MQVTWKRVSL AAAVLFLIGY IISVWWSVEP DSIEPHQLNN ETGHKIVGYA TTTSLILTME 
TLLDKNGGWL SNDVMPPSLF MDNMPAFEFG AIEQARDLAL IMRKEFSRSQ SQSTADKDLL
AAHSKLNIEH TSWLVPSAEG EYRDAIKLLK LYRARIADTN NPDAQFYARA DNLNEWLKEV
QKRLGSMSQR LSASVGQERI NTDLAGDTEA SQSTPNLASQ EIKTGWWQID DVFYETRGAT
WALLNFMKAI EVDFADVLKK KNAEVSLQQI IRELEETQQP VWSPIVLNGS GFGIVANHSL
VMANYISRAN AAVIDLTNLL TQG