Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0542 |
Symbol | |
ID | 4924132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 612691 |
End bp | 613662 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162071 |
Product | hypothetical protein |
Protein accession | YP_001092673 |
Protein GI | 127511476 |
COG category | [S] Function unknown |
COG ID | [COG5345] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00442686 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.62984 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGTAA CATGGAAACG GGTCAGCCTG GCGGCCGCCG TCTTATTTTT GATTGGCTAC ATCATCAGCG TATGGTGGAG CGTAGAGCCA GACAGCATAG AGCCCCATCA GCTCAATAAT GAGACGGGCC ATAAGATAGT GGGCTACGCG ACCACTACCT CTCTGATTTT GACCATGGAA ACCCTCCTCG ATAAGAACGG TGGCTGGTTG TCGAACGATG TGATGCCTCC CTCGCTGTTT ATGGATAACA TGCCCGCCTT CGAGTTTGGC GCCATCGAGC AGGCGCGGGA TCTGGCGCTG ATCATGCGCA AGGAATTTAG CCGTTCCCAA TCGCAGTCGA CCGCCGACAA AGATCTGCTG GCGGCCCACT CTAAGCTGAA TATCGAACAC ACCAGTTGGT TAGTGCCGAG CGCCGAGGGC GAGTATCGTG ACGCCATCAA GCTACTCAAG CTTTATCGTG CCCGCATCGC CGACACCAAT AATCCCGATG CTCAGTTCTA TGCCCGCGCC GATAACCTCA ACGAATGGCT CAAAGAGGTG CAGAAGCGCC TGGGTAGCAT GTCTCAGCGC CTGTCTGCCA GTGTCGGCCA GGAGCGGATC AATACCGATC TCGCCGGTGA CACTGAGGCC AGCCAGTCGA CGCCTAATCT GGCCAGCCAG GAGATCAAGA CCGGCTGGTG GCAGATAGAC GATGTCTTCT ATGAAACCCG CGGCGCCACC TGGGCACTGC TGAACTTCAT GAAGGCTATT GAGGTGGATT TCGCCGACGT ATTGAAGAAG AAAAATGCTG AGGTTAGCTT GCAGCAGATC ATTCGTGAGC TGGAAGAGAC GCAGCAGCCT GTGTGGAGCC CGATCGTGTT GAACGGTTCA GGGTTTGGCA TAGTGGCCAA CCACTCGCTG GTGATGGCCA ATTATATTTC CCGCGCCAAT GCCGCGGTGA TCGATTTAAC TAACTTATTG ACTCAAGGCT AA
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Protein sequence | MQVTWKRVSL AAAVLFLIGY IISVWWSVEP DSIEPHQLNN ETGHKIVGYA TTTSLILTME TLLDKNGGWL SNDVMPPSLF MDNMPAFEFG AIEQARDLAL IMRKEFSRSQ SQSTADKDLL AAHSKLNIEH TSWLVPSAEG EYRDAIKLLK LYRARIADTN NPDAQFYARA DNLNEWLKEV QKRLGSMSQR LSASVGQERI NTDLAGDTEA SQSTPNLASQ EIKTGWWQID DVFYETRGAT WALLNFMKAI EVDFADVLKK KNAEVSLQQI IRELEETQQP VWSPIVLNGS GFGIVANHSL VMANYISRAN AAVIDLTNLL TQG
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