Gene Shew_0535 details

Gene Information

• Locus tag: Shew_0535
• ID: 4923272
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 608229
• End bp: 608891
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640162064
• Product: single-strand binding protein
• Protein accession: YP_001092666
• Protein GI: 127511469
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000686084
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCAGTC GTGGTGTCAA TAAGGTAATT TTGGTCGGTA ACCTAGGGAA AGATCCCGAA 
GTTCGTTACA TGCCAAACGG CAACGCCGTA GCCAACTTTA CAGTGGCGAC CAGTGAGTCT 
TGGAAAGACC AGCAAGGTCA GATGCAAGAA CGTACAGAAT GGCACAACAT TGTAATGTAC 
CGTCGTCTTG CGGAGATCGC CGGTGAGTAC CTGAAGAAGG GCTCGAAAGT GTATCTGGAA 
GGTAAACTGC AGACCAGCAA GTGGCAGGAT CAGCAGACCG GACAAGATCG CTACAAGACA 
GAGATCAACG TTAACGAGAT GCAGATGCTG GATAGCCGTG GCCAAGGCCA AGGCGGTCAG 
GGTGGCCAAC AAGGTTACGG TGCGCCGCAA CAGCAAAACC AATACGCACC ACAGCAGTCG 
GCGCCAGCCG CGCGTCCACA GCAGCCGCAA CACTCGGCTC CTCAAGGTGG GTACGGTGCC 
CAGCAACAGG CAGCACCACA GCAGCAAGGT TATGGCGCTC AACCACAGCA GGCCCCTGCC 
TATGCACCTA AGCCGCAGGC GGCTCCACAA CAGCAAGCGC CGCAGCAGCG TCCAGCACCT 
CAGCCACAGC AGAACTTCAC GCCGGATCTG GATGACGGTT GGGACGACGA TATCCCGTTC 
TAG 

 

Protein sequence

MASRGVNKVI LVGNLGKDPE VRYMPNGNAV ANFTVATSES WKDQQGQMQE RTEWHNIVMY 
RRLAEIAGEY LKKGSKVYLE GKLQTSKWQD QQTGQDRYKT EINVNEMQML DSRGQGQGGQ 
GGQQGYGAPQ QQNQYAPQQS APAARPQQPQ HSAPQGGYGA QQQAAPQQQG YGAQPQQAPA 
YAPKPQAAPQ QQAPQQRPAP QPQQNFTPDL DDGWDDDIPF