| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0531 |
|---|
| Symbol | |
|---|
| ID | 4921020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 600553 |
|---|
| End bp | 602352 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162060 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001092662 |
|---|
| Protein GI | 127511465 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCCA GTGAAAAAAC TTTCCGCGAA CTCGGCCTGT CCGAGCCTTT GTTGCGTGCT
CTCGACGAGC TAGGTTATGA AAAACCTACC CCGATCCAGG CCGCCAGTAT CGACCCCCTC
ATGGCGGGTA AAGATATTCT AGGCCAGGCG CAAACCGGTA CGGGTAAAAC CGGTGCCTTT
GCCCTGCCCC TACTCAACGC TATCGATCCT AACCGCAACG TACCACAAAT TCTGGTACTG
GCGCCGACCC GCGAACTGGC GGTACAGGTT GCCGAAGCCT TCGGTAGCTA CTCCAAATTT
ATGAAGGGCC TGCACGTACT GCCTATCTAC GGCGGTCAGA GCATGCATCA ACAGCTTAAC
GCCTTGCGTC GTGGCCCACA GATTGTCGTG GGTACACCGG GTCGTGTCAT GGACCACATG
CGTCGTGGCA CCCTGAAGCT AGAGACACTC AACGCCTTGG TACTCGATGA GGCCGATGAA
ATGCTCAAGA TGGGCTTTAT CGACGACATA GAGTGGATCC TGGAGCACAC GCCACAGGAG
CGTCAACTGG CACTCTTCTC GGCCACCATG CCAGAGCAGA TCAAGCGCGT CGCCAACAAG
TACCTGCAAA CGCCGGTACA CATCAGCATC GCAGCTAGCC ACACAACCGT TGAGTCTATC
GAGCAGCGCT TCGTGCAGGT GTCTCAGCAC AACAAACTCG AGGCCCTGGT ACGCGTACTG
GAAGTTGAAA ACACCGAAGG TATCATCATC TTCGTGCGTA CCCGTAACTC TTGTGTCGAA
CTGGCCGAGA AGCTGGAAGC CCGCGGTTAT GCCTCATCGC CACTGCATGG TGACATGAAC
CAACAGGCTC GTGAGCGCGC CGTCGATCAG CTTAAGCGTG GCAAACTGGA TATCCTGATC
GCCACCGACG TGGCCGCCCG TGGTCTGGAC GTTGAGCGTA TCGGTCACGT GATCAACTAT
GATATCCCCT ACGACACCGA AGCCTATGTA CACCGTATCG GTCGTACCGG CCGCGCCGGC
CGTACCGGTA TGGCGATTCT GTTCGTCACC CACAGAGAGA TGCGCATGCT GCGCACCATC
GAGCGTGCGA CCAAGAGCCG TATCTCACCG ATGAACGTGC CAAGCCCTGA GACAGTGGCC
GAGCGTCGTC TGTCGCGTCT GGGAGAGCAG GTTTCCAACA CCATCGACAA CGAGTCGCTG
GACTTCATGC ATGGCGCCGT TGCCCAGCTG TGTCAGCAAC TGGAAGTGGA CACCGAAGTA
CTTGCCGCCG CACTGCTCAA CATGGTGCAG CAGGAGCGTC CTCTGCAGCT GCCTCCTATT
CAGGAGCGTC AGCGCGATAG CCGTGACGAG CGCAACTCGC GCGACCGTGG CGACCGCTCA
GATCGTGCTC CTCGTGGCCG CCGCGAATCG CGTCCGACTC CGGCAAACCT GGGCCAGGCA
GATACCCTGA AAGATCATCC AGACGTCAAG ATGTGCCGTT ACGTGCTAGA CGTGGGTCGT
GACCATGGTG TGGGTGTAGG CAACATCGTC GGCGCAGTTG CCAACGAAGC CAACATCGAC
AGCCGTTACA TAGGTCAGAT CCAATTGTTC GATCAGATCA CCTCGATCGA CCTGCCAGAA
GGCATGCCAA AGGATGTCCT GCAACACCTG AAGAAGGTTC GCGTATGTGG CAAGCCGCTA
AACATCCGCG AAGCGGGCAG CGAAATTGTC AATGCCAGCG ATGACAACCG TGCACCGCGT
CGTCGCAAGC CTGTGGGTGA GCGCAAGTCA CACCGTAAGG GCAACAGAGA CAACGGCTAA
|
|---|
| Protein sequence | MSSSEKTFRE LGLSEPLLRA LDELGYEKPT PIQAASIDPL MAGKDILGQA QTGTGKTGAF
ALPLLNAIDP NRNVPQILVL APTRELAVQV AEAFGSYSKF MKGLHVLPIY GGQSMHQQLN
ALRRGPQIVV GTPGRVMDHM RRGTLKLETL NALVLDEADE MLKMGFIDDI EWILEHTPQE
RQLALFSATM PEQIKRVANK YLQTPVHISI AASHTTVESI EQRFVQVSQH NKLEALVRVL
EVENTEGIII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN QQARERAVDQ LKRGKLDILI
ATDVAARGLD VERIGHVINY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT HREMRMLRTI
ERATKSRISP MNVPSPETVA ERRLSRLGEQ VSNTIDNESL DFMHGAVAQL CQQLEVDTEV
LAAALLNMVQ QERPLQLPPI QERQRDSRDE RNSRDRGDRS DRAPRGRRES RPTPANLGQA
DTLKDHPDVK MCRYVLDVGR DHGVGVGNIV GAVANEANID SRYIGQIQLF DQITSIDLPE
GMPKDVLQHL KKVRVCGKPL NIREAGSEIV NASDDNRAPR RRKPVGERKS HRKGNRDNG
|
|---|
| |