| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0529 |
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| Symbol | |
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| ID | 4920816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 598302 |
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| End bp | 599129 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162058 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001092660 |
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| Protein GI | 127511463 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGAA TCGTGAATAA GCTTTTGTTA GTAGCAGCTT TGGTCGCGAT AGCCCCTCTT
TGCAATGCAA CTCAGTTAGC CCCTTGTAAA ACGGCAGAAT GCGAGGCCTA TTTTGACGCC
TATACTATCT TGACCAAACG GGGTCATTCG AGCGCAATGG CGACGCTTGG TGAGCTCTAC
TACTCGGGCT ATGGCACGGA AAAAGATCTC GATAAGGCCT TTAAGTGGTT TAGACGCGCC
GCCAAGTTTG GCCACACCAC GGCGCAATAT AAAGCCGGGA TCATGTACTT GCAAACCTCT
GCATACCAAG ATATCGACAA AGGGATCGCT TTGCTAAAAC GTAGCGCCAA GGCGACGTTT
TCACCAAGCG CGCTAGCCCT AGGCAAGATC TACCTGCAAG ACACACTGAT CCCAAGGGAT
TTAGCCGCAA CGGACAGGTG GCTGACGTTC GCTTATAAGC TCAACAACTT AGAGGCAATG
AAATTTGCCA AAACCCTTAG AGAATCGCCC GATACTGCCA AGCTCCCGCT GCCTAAACTG
TTTGCACTTG TCGATGCCGA AAAGCCCGTC GCGGCCGACA GTAAATCATC ATTGGAAGAG
ATGGAGATAA TACTGGTTGA GGCCCCTGAC TATGCCGCCT ATTTCGATGA GGAGATAGCA
CAGCTTAATC AGAGTCGTCC CGACACGGCA AAGGGAACCG GGTCCAGCAT CGCTGGACGA
ACCTGCTCAG ATATCTGGGC ATGCAGCAGT GAGGGCGACA GCGAACGCAT TAGAGATCTA
CAGTTATCGG ATTGGGGCAA TATCGCATTG GCCTTAAATG TTAGGTAA
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| Protein sequence | MQRIVNKLLL VAALVAIAPL CNATQLAPCK TAECEAYFDA YTILTKRGHS SAMATLGELY
YSGYGTEKDL DKAFKWFRRA AKFGHTTAQY KAGIMYLQTS AYQDIDKGIA LLKRSAKATF
SPSALALGKI YLQDTLIPRD LAATDRWLTF AYKLNNLEAM KFAKTLRESP DTAKLPLPKL
FALVDAEKPV AADSKSSLEE MEIILVEAPD YAAYFDEEIA QLNQSRPDTA KGTGSSIAGR
TCSDIWACSS EGDSERIRDL QLSDWGNIAL ALNVR
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