| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0528 |
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| Symbol | |
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| ID | 4923876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 597398 |
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| End bp | 598222 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162057 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001092659 |
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| Protein GI | 127511462 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAGA AGAGACTCAA AGCACTCTCA ATTGGACTAA GCCTGTTGGC GGTTACCTCC
CAAGGCTTTG CTGCCGGGCT TCCCGAATGC GACACGGCTG AATGCCAGGA GTATTTCAAG
GCCTATACCA TCTTGACCAA ACGAGGGCAT TCGGACGCCA TGGCGACCCT GGGCGAACTC
TACTATGCCG GCTATGGCAC AGAGAAAGAT ATGGAGCAAG CTTTCAAGTG GTTTAGACGT
GCCGCCAAGT TTGGCAATAC CACGGCCCAG TACAAGGCCG GGATCATGTA TCTTCAAGAT
TCAAAAGGAA GAGATATCGA CAAAGGCATC ACACTGCTCA AACGCAGCAG TAAAGTCGGT
TTCTCTCCCA GCGCCTTCGT ATTAGGTAAA ATTTATCTTG GCAACGAACT CGTTAAACAA
GACCTTGCCG AAGCCGATCA CTGGCTAGCC AAGGCCTATG AGCTCAACAA CCAAGAGGCG
CAAAAATTTG CCAAGCAACT TAAAGCGTCC GAACAAGGCC AAACACTCGC CCTGCCAACG
CTTTATGCCC TGCTAGATAC GCAAGCCAGC AGTAAACCCG GCAGTAATGC ACCTGTCGGT
GAGATGGAAA CCATCACAGT CACTGCGCCT GACTATACCC AGTTTTTCAA CGACGAAATC
GCCCGCCTCA ACAACAGTCG CCCAGATACG GAAAAAGGCA CAGGATCCAA TATCGCAGGC
AGAACCTGTG CCGAATTGTG GGCATGTAGT ACGGAGGGAG ACAGTGAGCG TATTCGCGAC
TTCCTGCTGT CTGACTGGGG AAGGATAGCT CTTAGTTTTC GATAA
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| Protein sequence | MMKKRLKALS IGLSLLAVTS QGFAAGLPEC DTAECQEYFK AYTILTKRGH SDAMATLGEL
YYAGYGTEKD MEQAFKWFRR AAKFGNTTAQ YKAGIMYLQD SKGRDIDKGI TLLKRSSKVG
FSPSAFVLGK IYLGNELVKQ DLAEADHWLA KAYELNNQEA QKFAKQLKAS EQGQTLALPT
LYALLDTQAS SKPGSNAPVG EMETITVTAP DYTQFFNDEI ARLNNSRPDT EKGTGSNIAG
RTCAELWACS TEGDSERIRD FLLSDWGRIA LSFR
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