| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0520 |
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| Symbol | |
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| ID | 4920513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 589176 |
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| End bp | 590342 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162049 |
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| Product | O-succinylhomoserine (thiol)-lyase |
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| Protein accession | YP_001092651 |
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| Protein GI | 127511454 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGC GTAAACTAGC CACCGCCGCC GTACGACGAG GCATAGAGTC AGACACTCAG
CACGGTGCCG TGGTGCCGCC TATCTATCTG TCGACAAACT ACTCGTTTGA AGGGCATCAA
CAGCCGCGGG CGTTCGATTA CAGCCGTTCC GGTAATCCGA CCCGCTCCAT TCTCGGCGAT
GCGATTGCTG AACTGGAACA AGGGGCGACC GGCGTGGTGA CCTGTACCGG CATGGCCGCC
ATCACCCTGG TGACCAGCCT GTTAGGACCA GAGGATCTGC TGGTGGTGCC TCACGATTGC
TATGGCGGCA GCTATCGCCT CTTCACCAAC CTGGCCAAGA AGGGCGCCTT CAAGCTATTG
GTGGTGGATC AAACCGACGA GCGAGCGCTT GAGCAGGCGC TGACCCAGTC ACCCAAGATG
GTGTGGCTGG AGACTCCTTC TAATCCGCTG TTGCGTGTGG TCGATATTGA GGCCATCGCC
CAGGCAAGCC ACAAGGTGGG CGCTCAGGTG GTGGTGGACA ACACCTTCCT CTCTCCTGTG
TTACAACAGC CACTGCAGCT GGGGGCCGAT ATCGTGGTGC ACTCCACCAC CAAATATATC
AATGGTCACA GCGATGTAGT GGGAGGCGCC GTGGTGGCCA AAGACCCTGA GGTGGGCGAG
CTGCTGCACT GGTGGTCAAA CACTCTAGGT CTGACCGGGT CAGCCTTCGA CAGCTACCTG
ACCCTGAGGG GGCTGAGAAC CCTGGCGGTG CGCATTCGTG AACACCAAGC CAACGCTCAG
AAGGTATTGG CACTGCTTTG TGACCACAAG GCGGTGGAAA AAGTGTATTA TCCGGGGCTT
GCCGAGCATC CTGGCCATGA AATTGCGGCC AGACAGCAGA AGGGCTTCGG CGCTATGCTG
AGTTTTGAAT TAAAAGGTGG CGAATCGGCA CTCGTTGCCT TTTTAGATGC GTTACAATAC
TTCTCGGTAG CCGAGAGTCT GGGAGGCGTA GAGAGTCTGG TGGCGGTCCC CGCGACCATG
ACCCACAGAG CCATGGACCC AGATGCACGC CGTGAGGCGG GCGTGAAAGA TACCCTGATC
CGTTTGTCAG TGGGCATAGA AGATGGCGAG GATCTGGTGG CAGATATTCT TGCGGGTTTA
GAAGCGGCTA TCGCGGTAAG TAGTTAA
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| Protein sequence | MTARKLATAA VRRGIESDTQ HGAVVPPIYL STNYSFEGHQ QPRAFDYSRS GNPTRSILGD
AIAELEQGAT GVVTCTGMAA ITLVTSLLGP EDLLVVPHDC YGGSYRLFTN LAKKGAFKLL
VVDQTDERAL EQALTQSPKM VWLETPSNPL LRVVDIEAIA QASHKVGAQV VVDNTFLSPV
LQQPLQLGAD IVVHSTTKYI NGHSDVVGGA VVAKDPEVGE LLHWWSNTLG LTGSAFDSYL
TLRGLRTLAV RIREHQANAQ KVLALLCDHK AVEKVYYPGL AEHPGHEIAA RQQKGFGAML
SFELKGGESA LVAFLDALQY FSVAESLGGV ESLVAVPATM THRAMDPDAR REAGVKDTLI
RLSVGIEDGE DLVADILAGL EAAIAVSS
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