| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0511 |
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| Symbol | |
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| ID | 4921196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 577130 |
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| End bp | 578455 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162040 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001092642 |
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| Protein GI | 127511445 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACA GCCAACTCAC TCAGCGTTCA TGGCCTGAAC ACGAATTTAC CGAGGCCGTC
GAGGCGCCCG CCGAGAAGCG CGCCATTCGC CGCATCACCT TCTTTATCGC CACGGCCGTC
TTCATTCTGC TGATCTGGTC TATCTTCACC AACATAGAGG AGATCGCCAA GGCCAAGGGC
CAGGTGGTGC CGCTGGGTCA CAGGCAGGTG ATCCAGAGCC AGACCGGCGG CACCCTGGCA
TCGATCGCCG TCGCCGAGGG AGATCTGGTC CAGAAGGGCG ACCTTATCGC TAACTTTGTC
GCCACCGACA GCCAGGCGCT GAAGGAGGAG CTACAAAGCA AGCAGGCCAA CCTGGAGCTG
AAGATAGAGA GATACACCGC CTTCCTCGAG GAGCGTGAGC CCGATTTTAA CGCCTATCAG
CTCGGCTTCC CCGCCCTAGT GGCTCAACAC ATCAACGCCC TGGCACGTAT GAATCAGGAG
AAGCAGGCGA TCATCGCCCT GTCCGAATCT GACGTGGCCA AGTCTGAGGC TGAGCTGGCC
AGTGTCGAGC AGGAGATCAC CCCGCTCAAG GATCAGATCC GCTCGGTAGA ACAGACCCTC
AAGATGATGA ACTCGGTCAA GGAGCAACAG GCGGTTTCTA AACTCAGGAT GCTGGAATCA
CAACAGAAAC TCGACGCCTA TATCCGTGAG CTCAAGGTGC TGGAGGGGCG TCGCAGCGTG
CTGCAACGCA ACATAGACAA TCAAGAGAAA CAGCTGGCCC AGAAGCAGGC GAGCCTCTTC
AACGAGGTGG GCGAGAAACG CACAGACGCC CAGGCCGAAC TGCTAGGCAT AGTTGCCCGG
CTCAAATCCT CTGACTCCCT GGTGCAGCAG AACCGGGTCA CCTCGCCGGT GGATGGCATC
ATTCAATCTA TCCCCAACAA CTCCGCGGGT AGCGTGATCC AGCCAGGCGG TACCGTGGCG
GTGATCGTCC CCACCACACC CACTGCGCTG CTAGAGGCCA AGCTGTCCCC CAGAGACATA
GGCTTCGTCA CCGTCGGGCA GAAGGCCCGC ATCAAGATAG ATGCCTTCGA CTACAGCCGC
TACGGCGCCA TCGATGGGCT GGTGAAGAAG ATCTCCCCCA GCACGGACGC CGACGAGAAA
GGTGGCGTCT TCTACAAGGT ACAGATAGCC ATCGACAAAC CCTACTTCGG CGACCAACCC
GACAAGCTGG CGTTGATCCC CGGCATGACG GGAGAAGCCG ACATAGTGAC AGGCGACAAG
ACAGTCTTCC AGTACCTATG GAAGCCGGTC TTTACCAATG TAACCGAAGC CTTTGGTGAA
CGTTAG
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| Protein sequence | MNDSQLTQRS WPEHEFTEAV EAPAEKRAIR RITFFIATAV FILLIWSIFT NIEEIAKAKG
QVVPLGHRQV IQSQTGGTLA SIAVAEGDLV QKGDLIANFV ATDSQALKEE LQSKQANLEL
KIERYTAFLE EREPDFNAYQ LGFPALVAQH INALARMNQE KQAIIALSES DVAKSEAELA
SVEQEITPLK DQIRSVEQTL KMMNSVKEQQ AVSKLRMLES QQKLDAYIRE LKVLEGRRSV
LQRNIDNQEK QLAQKQASLF NEVGEKRTDA QAELLGIVAR LKSSDSLVQQ NRVTSPVDGI
IQSIPNNSAG SVIQPGGTVA VIVPTTPTAL LEAKLSPRDI GFVTVGQKAR IKIDAFDYSR
YGAIDGLVKK ISPSTDADEK GGVFYKVQIA IDKPYFGDQP DKLALIPGMT GEADIVTGDK
TVFQYLWKPV FTNVTEAFGE R
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