| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0505 |
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| Symbol | |
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| ID | 4923237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 563145 |
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| End bp | 564503 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162034 |
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| Product | nitrite reductase (cytochrome; ammonia-forming) |
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| Protein accession | YP_001092636 |
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| Protein GI | 127511439 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAC TAACTGCCAT CGCATTGAGC CTGCTGGGCT GGTGCACCCT GAGCCAGGCG
CTCGCCGCAG ATGTGAGCCC CGAGAAGATG AAGGCCAAAT ATCCTAACCA GTATGCCAGC
TGGCAGGCGA CTTCGACCCA GGCGGCGCGC AGCGACATGC TGGCCAGCTA TCCCGCCGCC
ATTATCCTCT GGGCGGGCTC GGCCTACGCC AAGGAGTACC ATAGCCCTCG GGGGCATCAG
TTTGCGGTGG CCGACGTGAC CCATACCCTG CGCACAGGTG TACCGCCTGG AGAAGGCAAG
AAGGGGCTGT CGGCGAGCTG CTGGACCTGT AAGTCCCCCG ACGTGCCAAG GCTTATCGAT
GAGCTGGGGG TCGAAGGCTT CTCGGCGAAG AACTTCACCG ATCTCGGCAC CGAGATGAAC
AGTGTGGTCT ACTGCAGTGA CTGTCATGAG CAGGGCAAGG CGGAGTTGAG CCTGCCGCGT
CCTCACGCCC GCGACGCCAT GGCCAAGGTC CATCTGCCCT TCGACAAGCA GGATGAGGCG
ATGCAGGGGG CGCAGGTGTG TGGCCAGTGC CATGTGACCT ACTACTTTCA GCCGGAGCGC
AGCAACAAGG TTAACATTCC CTGGATCTTC GGCAGCAGCG CGGATCTTAT TGAAAAATAT
TACGACACTC GCCGCTTCTA CGAGTGGATC CATCCCGTTT CTAAGACGCC CATCCTCAAG
GCGCGTCATC CTGAGTTTGA GCATTGGAGC CGCAGCGAAC ACGCCAAGGT GGGCGTCACC
TGTGTGACCT GCCACATGCC GGCGGCGACC GACGGCGAGG GCAAGGCCTA TACCAACCAT
CAGGTGGGCA AGGCGCTGCC AAACTATGAC GTTGTGTGTC AGGGCTGCCA TGAGAATAAA
CAGGCCTTGA TGAAACAGCT CAACTCGGCC AAGTCGCAGA TAGCCGAGAA GGCGAGACGC
GTGGAGCAAC TACTGGTCAA GGCCCACTAT GAGGCGGGAG CCGCCTGGGA TGCGGGCGCG
AGCTGGGCAA TCATGAACGA TGCGATCATG GCGATCCGTC ATGCCCAGTG GCGCTGGGAT
TTTGCCATGT CATCCCACGG CAGCTATGCC CATAACCCCC AGGAGGCTAA CGCTCTGCTG
GACACGGCGA TCCTTCAGGC CGAACATGCC CGCCGCGCGC TTAGCGAAAT CCTCAGTATG
TTGTCTGTTA CCCAGGTGAA CTACCCGGAC ATTTCCACCA AGGAGGCGGC GCAGCAGGCG
GTGGGGATCG AGCTGGATAA GCTGACCGAG GCTAAGCAGG CCTTTATCAA GCAAGAGGTG
GATAAACACT GGCCCGCGGT GAGCCGAACA GGTTACTAA
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| Protein sequence | MKKLTAIALS LLGWCTLSQA LAADVSPEKM KAKYPNQYAS WQATSTQAAR SDMLASYPAA
IILWAGSAYA KEYHSPRGHQ FAVADVTHTL RTGVPPGEGK KGLSASCWTC KSPDVPRLID
ELGVEGFSAK NFTDLGTEMN SVVYCSDCHE QGKAELSLPR PHARDAMAKV HLPFDKQDEA
MQGAQVCGQC HVTYYFQPER SNKVNIPWIF GSSADLIEKY YDTRRFYEWI HPVSKTPILK
ARHPEFEHWS RSEHAKVGVT CVTCHMPAAT DGEGKAYTNH QVGKALPNYD VVCQGCHENK
QALMKQLNSA KSQIAEKARR VEQLLVKAHY EAGAAWDAGA SWAIMNDAIM AIRHAQWRWD
FAMSSHGSYA HNPQEANALL DTAILQAEHA RRALSEILSM LSVTQVNYPD ISTKEAAQQA
VGIELDKLTE AKQAFIKQEV DKHWPAVSRT GY
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