| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0486 |
|---|
| Symbol | |
|---|
| ID | 4923296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 543518 |
|---|
| End bp | 544534 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640162015 |
|---|
| Product | permease |
|---|
| Protein accession | YP_001092617 |
|---|
| Protein GI | 127511420 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0701] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGCCT GGTTTACCCA ACTCGCCGAT CTCTTGGTCT ACGATCTGCT CGGCCTCTCC
AGCCAGAGCG CCGCCGGGCA GGCGCTGCAC TTCTTCGTCG AAGACACCAG CAAGATCTTC
GCCCTCTTAG TGGTGATGAT CTACCTGATC GGCTGGCTGC GGGCAGCGCT TAATGTCGAG
CGGGTGCGCG ACTATCTGGC GGGCAAGCCT AAGCTGCTGG GTTATGGCTT GGGGGCCGGC
TTTGGCGCCA TCACCCCCTT CTGCTCCTGC TCCAGTATTC CCGTGTTCCT CGGCTTTACG
ACGGCGGGGA TCCCCGTGGG GATCACCATG GCCTTCCTGC TAACCTCGCC GCTGATCAAC
GAGGTGGCCA TCTTGCTGCT GTTTAGCCTG CTGGGGGCCA AGATCACCCT GCTCTACGCC
CTCACCGGCA TCACCATTGG CATGCTCGGC GGTGCCCTGC TCGACCTACT GCATGCTGAG
CGCTGGCTAC AGCCCCTCGC CGCCAACGCC TACCGACGCG GCGCCACCCA GACGCAAACC
ACAGCTTCAG CATCTGACAC TTACACGCCA GACGAGAGCA CGCCCGGCAT AAGCTGGCGC
CAGCGTCACC AGTTCGCCAA GCAGGAGACG CTCACCATCT TCGGCCGCGT GTGGAAATGG
GTGATTATTG GGGTAGGTAT CGGTGCGGCG CTACACGGCT TCGTGCCCGC AGGTTATCTT
GAAGCCAACC TGGGCGACGG CCAGTGGTGG TCAGTGCCCA TCGCCGTACT GATGGGCATC
CCCCTGTATG CCAATGCCAC CGGGGTGATT CCGGTGCTGG AGAGCCTGTT GATCCAAGGC
GTGCCCCTGG GCACTACCCT GGCCTTCTGC ATGAGCACGG TCGCCGCCAG CTTTCCCGAA
TTTGTCATGC TCAAACAGGT GATGCAGTGG CGCCTGCTGG CCCTGCTGTT TGCCCTGCTA
CTGGTCGCCT TCACCCTAAT GGGTTGGGTG CTGAACCTGG TCACCATTAG CGGATGA
|
|---|
| Protein sequence | MLAWFTQLAD LLVYDLLGLS SQSAAGQALH FFVEDTSKIF ALLVVMIYLI GWLRAALNVE
RVRDYLAGKP KLLGYGLGAG FGAITPFCSC SSIPVFLGFT TAGIPVGITM AFLLTSPLIN
EVAILLLFSL LGAKITLLYA LTGITIGMLG GALLDLLHAE RWLQPLAANA YRRGATQTQT
TASASDTYTP DESTPGISWR QRHQFAKQET LTIFGRVWKW VIIGVGIGAA LHGFVPAGYL
EANLGDGQWW SVPIAVLMGI PLYANATGVI PVLESLLIQG VPLGTTLAFC MSTVAASFPE
FVMLKQVMQW RLLALLFALL LVAFTLMGWV LNLVTISG
|
|---|
| |