| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0479 |
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| Symbol | |
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| ID | 4922371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 536139 |
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| End bp | 537440 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640162008 |
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| Product | HipA domain-containing protein |
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| Protein accession | YP_001092610 |
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| Protein GI | 127511413 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAT CACCAATCCT TGTGTTAGAT ATGCTACTTG GTGACCAGCT TATCGGCGCG
TTGTCATTTG ATCCAAGCGA TGAGCGTTTT GCGGTCAGCT ACACTCAAGC CTGGCAGCAA
AGCGGTTTTC CATTATCACC TACGATCCCT TTGGATGGCT CGGGTAGCAG TACGCAAATT
GCCATGTTTC TGGTTAATTT GCTGCCTGAG AATAAGGGGC TCGATTACCT TGTTGAATCG
CTTGGTGTTG CAAAGGGCAA TACCTTTGCG CTCATCCGGG CCATTGGCCT AGATACTGCG
GGTGCCATCG CCTTTTCTTC TAAAGGTTCT GCATTTCCAC CGACAACACT CCGGACTATC
AGTGACGATG AGATCGTTCA GCGACTGGAA GATCCTGAGT TCTGGCCGAT GGAGATTTGG
GATGGTAGAC CCAGGCTGTC GGTGGCTGGG GTACAGTCAA AGTTAAATCT CTTCTTTAAT
GGTGAGGAGT TTGGCTTCGG TGAAGGAGCA CTGTCATCGA CACATATCCT GAAGTTTGAA
CAGCATCCGC ATCTGGTCAT CAACGAGTTC CTTACTATGC GCTTGGCTAA GGCGCTGGCC
TTGAAAGTCG CGAATGTCGA AATTCGTTGT TTTGGCCAGT ATAAATCCTT GTGTGTCGAA
CGTTTCGATC GTCGCTATCT GGACGATGAA AACAGGGTGC AGAGGCGGCA CATTATCGAT
AGTTGCCAAG CACTTGGTTT TAGCGTCAAC AAGAAATATG AACGTAACTT TGGTAGTGGA
CGGGATGTCA GGGATATTCG TGAAGGTGTC AGCCTGCCAA GGTTGTTTGG TCTTGCGAAT
CAATGTATTA ATCCGGCTGC AGCCAAGCAG GATATGTTGC GGTGGACGCT GTTCAATTTA
TTGAGTGGCA ATGCCGATGC CCATGGGAAA AACTACTCGT TTTTTATGAC GCCTAACGGG
ATGTTACCTA CACCTTGGTA TGACCTCGTT TGCGTGGCCT TATATGAGGA TTTTGAACAA
GAGTTGGCAA TGGCGATAGA TGATGAGTTC GATCCCAATA AGATCTATGC CTATCAACTT
GCCGCCTTTA GTGAAGAGGT GGGATTACCA AGAGCCTTAA TCGTAAATAG CCTGGATAAG
ATGGTGGCTA AGATAAGGCT CGAAATTAAT GGTGTCATCG CCATGCTCAA AGACTTGGAC
GAAGATGAGC AGGCTTTTGT GGAGGCATAT AAGGCACAAC TGCTGGCCAG ATGCGAACGT
TATTCGGCGA TCGCTCCTGA AATCAAGGCT ATTGAGCTTT AA
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| Protein sequence | MAESPILVLD MLLGDQLIGA LSFDPSDERF AVSYTQAWQQ SGFPLSPTIP LDGSGSSTQI
AMFLVNLLPE NKGLDYLVES LGVAKGNTFA LIRAIGLDTA GAIAFSSKGS AFPPTTLRTI
SDDEIVQRLE DPEFWPMEIW DGRPRLSVAG VQSKLNLFFN GEEFGFGEGA LSSTHILKFE
QHPHLVINEF LTMRLAKALA LKVANVEIRC FGQYKSLCVE RFDRRYLDDE NRVQRRHIID
SCQALGFSVN KKYERNFGSG RDVRDIREGV SLPRLFGLAN QCINPAAAKQ DMLRWTLFNL
LSGNADAHGK NYSFFMTPNG MLPTPWYDLV CVALYEDFEQ ELAMAIDDEF DPNKIYAYQL
AAFSEEVGLP RALIVNSLDK MVAKIRLEIN GVIAMLKDLD EDEQAFVEAY KAQLLARCER
YSAIAPEIKA IEL
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