| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0470 |
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| Symbol | |
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| ID | 4922358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 527511 |
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| End bp | 528878 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640161999 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001092601 |
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| Protein GI | 127511404 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.11231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGACA GACACGGGCT GCTCAGTCAG CCAATCGGTC GTGTACTGCT AAATATGAGC
CTCCCGAACC TGATTGGTAT TCTCACCATT CTTGGGTTCA GCCTTGTAGA CACCTTTTTT
ATCAGCCAGT TGGGGACAGA AGCCCTGGCG GCCATCAGCT TTACCTTTCC GGTCACCCTG
ATCGTCTCCA GCATCGCCAT CGGCATAGGT GCCGGGGTAT CGACTAATCT CGGCCGCCTC
ATCGGCAGTG GCAACAGCCC CAAGGCCAAG GTATTTCTGC ATGACGCCCT GCTGATCACC
TTCTGGCTGA TCGCCGCCCT GTCCCTGCTG GGCAGCCTAT TTATCGGCCC GCTGTTTACC
CTGCTGGGCG CCAACGACGA CAGCCTGCCG CTGATCCGCG ACTATATGTT TCTCTGGTAT
CTGGGGGCGC CGCTGCTGGT GCTCTTGATG GTGGGCAACC AGGGGCTGCG CGCCACCGGC
GATACCAAGT CGCCGGCCAA GATCATGGCG CTGGCGGCGG TGATCAACCT GGTGCTCGAC
CCGTTGCTGA TCTTCGGTCT AGGCCCCTTC CCCCGCTTGG AAATTCAGGG CGCGGCCATC
GCCACCCTGA TCTCCTGGGT GGTGGCGCTG TCTCTGTCGG GTTACCTGCT TATCATCAAG
CGCAACCTGG TGGACTTTGC CGAGTTTAAC CTTGAGCGCA TTCACTGCAA CTGGCGCCAG
CTGGCCCATA TCGCCCAGCC TGCGGCGCTG ATGAACCTGC TCAACCCTGT GGCCAACGCC
ATCATAATGG CCATGCTGGC GCGCATCGAC CACAGCGCGG TGGCGGCATT CGGCGCCGGT
ACCCGTTTGG AATCGGTTTT GCTGATCGCC GTGATGGCGC TCTCCTCCAG TTTGGTGCCT
TTTATCGCCC AAAACCTAGG GGCGGGACAG ACGGAGCGCG CCCGCGACGC CCTCATGCTG
TCGCTACGTT TCGTGCTGGT GTTCCAGACC CTCATCTATC TGCCGCTGGC ACTCATGGCT
ACCCCTATTG CCCAACTGTT CAGTAAAGAT CCCCAGGTGA TCGAGTGGCT CAGCTTCTAC
ATCATCGCCC TGCCCGCCGC CTATGGTCCA CTGGGGATGG TGATCCTTAC CGCCACCTCA
CTCAACGCCT ATCACAGGCC GATGAGCTCC TTGGTGCTTA ACGTCTGTCG CCTGTTTCTA
CTCCTGCTGC CGCTGGCGGC GCTGGGCTCT TATCTGGGCG GCGTGAAGGG CCTGCTGCTG
GCGCTACCTA TCACCAACGC CGTGATGGGG ATCGCCTGTT ATATCCTGGC CAGTCGCATC
ACAGAGCCAG ACACCACGCC CAAGCATGTC GAGATCTACA AGCGTTAA
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| Protein sequence | MRDRHGLLSQ PIGRVLLNMS LPNLIGILTI LGFSLVDTFF ISQLGTEALA AISFTFPVTL
IVSSIAIGIG AGVSTNLGRL IGSGNSPKAK VFLHDALLIT FWLIAALSLL GSLFIGPLFT
LLGANDDSLP LIRDYMFLWY LGAPLLVLLM VGNQGLRATG DTKSPAKIMA LAAVINLVLD
PLLIFGLGPF PRLEIQGAAI ATLISWVVAL SLSGYLLIIK RNLVDFAEFN LERIHCNWRQ
LAHIAQPAAL MNLLNPVANA IIMAMLARID HSAVAAFGAG TRLESVLLIA VMALSSSLVP
FIAQNLGAGQ TERARDALML SLRFVLVFQT LIYLPLALMA TPIAQLFSKD PQVIEWLSFY
IIALPAAYGP LGMVILTATS LNAYHRPMSS LVLNVCRLFL LLLPLAALGS YLGGVKGLLL
ALPITNAVMG IACYILASRI TEPDTTPKHV EIYKR
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