| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0444 |
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| Symbol | |
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| ID | 4920769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 495031 |
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| End bp | 496653 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161973 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001092575 |
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| Protein GI | 127511378 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACGCA ACTTAGCCCT GGCGCTGGTG ACTATGATGG CCCTAGCCCA TCTTCCCGCC
ACCGCCGATG AAGCCCTCCA GACACCCCAG CCCCTGACTG AACTGACTCA ACTGCAACAG
ACCATAGATT CAGACATCGC TAAACTAGGC AATGCCAACG GCGAGATGAA GCAGTTTATC
GAGTACCGTA TCAAGGAGCA CGCCAACCAG TTACACGACA AGTTCAAGCT GATGATGAAC
CAGCAACCGC TGGATAAGGC AAACCTGCTA CCACTGCTAC AGAAGCATCT GGCCTTCATC
GACAAGGTGG CCGATTACTA CGCCGCCGAT ATTGACCAAT TTAAACAACA GCTTGGCAGC
GATAATGACA CAGGCGTCAT GTATAAGCTC GCCATGCGGG ATCGCCAGCG CGACGAGATC
CTCAGCGCCA AGTATGAGAC CCTCACCTGG CTGGACGCCT TGGGCGAAGA TACCCAGGCC
ATCAAGACCC AGCTGACGGC TCAACTGCTG AAACGCTCAG ACATGCTCAA CAGCCTGGTG
CATTTCACCC AGGACAAACT CAAGCTGGCG GTGGATGAGG CGGCCAAGGC GGGTAAGGAT
GTCACTGCTG AGCAGACCGC CCTGGTCACC AACCTCAACG AGCGACTCAG CCTGACCAGC
GCCAGCCTCT CGGTGGCAAT CGAGCTGCTG GATGCTATGA GCCAGGACAC CACGGCCCTC
AAGCAGACCC TGTTTAGCAT CTCAGGGGAT ATCACCCAAG ACGTGCTCAA CGTCGATGTG
GCCAGCAACC TGCTGGACCA GTGGTGGAAC CAGGCCAAGA ATCAGGCGCT GGACAACGGC
CCTGGCCTGC TGTTCAAATT GTTTGTCTTC CTGCTGATCC TCTTCCTTGC CCATCTGGCT
GGCAAGGCGG TGCAGCGCAT CGTCAAGAAG ATGGTGAGCA ACTCAAAGCT GAAATTCAGC
AAGCTGCTGC AAGACTTCTT CGTCTCCCTC TCGGGTAAGA CAGTGTTTGC CCTGGGTCTG
ATGATCGCCC TGTCACAGCT AGGCTTCGAG CTTGGGCCAC TACTGGCTGG CTTCGGGGTC
GCGGGTGTGA TCATAGGTTT CGCCCTGCAG GACACCCTGT CTAACTTCGC CTCGGGCATG
ATGATCCTCA TCTATCGTCC CTACGACGTG GGCGATCTGA TCAACGCCGC GGGCGTGACG
GGTAAGGTGA GCCAGATGAG CCTGGTCTCC ACCACCATCA AGACCCTGGA CAACCAGCGC
CTGATCATCC CCAACAACAA GATCTGGGGC GACACCATCA ACAATATCAC GGTAGAACAT
CAGCGCCGCG TCGACATGAC CTTCGGCATA GGTTACGGCG ACAACATAGA GAAGGCCGAG
CAGGTGCTGC GCGGCATAGT CGACGAGCAT CCTAAGGTGC TCAAGCAGCC TGAGCCGACG
GTGAAGCTAC ACCTGCTGGG CGAGTCTTCG GTGGACTTCG TAGTGCGTCC TTGGGTGAAA
CCGGAAGATT ACTGGGATGT GTATTGGGAC ATCACCCGCG CGGTGAAGAT GCGCTTCGAC
CAGGAAGATA TCTCGATTCC TTTCCCACAG CGCGACGTGC ATATCTACCA GACTGGCAAG
TAA
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| Protein sequence | MLRNLALALV TMMALAHLPA TADEALQTPQ PLTELTQLQQ TIDSDIAKLG NANGEMKQFI
EYRIKEHANQ LHDKFKLMMN QQPLDKANLL PLLQKHLAFI DKVADYYAAD IDQFKQQLGS
DNDTGVMYKL AMRDRQRDEI LSAKYETLTW LDALGEDTQA IKTQLTAQLL KRSDMLNSLV
HFTQDKLKLA VDEAAKAGKD VTAEQTALVT NLNERLSLTS ASLSVAIELL DAMSQDTTAL
KQTLFSISGD ITQDVLNVDV ASNLLDQWWN QAKNQALDNG PGLLFKLFVF LLILFLAHLA
GKAVQRIVKK MVSNSKLKFS KLLQDFFVSL SGKTVFALGL MIALSQLGFE LGPLLAGFGV
AGVIIGFALQ DTLSNFASGM MILIYRPYDV GDLINAAGVT GKVSQMSLVS TTIKTLDNQR
LIIPNNKIWG DTINNITVEH QRRVDMTFGI GYGDNIEKAE QVLRGIVDEH PKVLKQPEPT
VKLHLLGESS VDFVVRPWVK PEDYWDVYWD ITRAVKMRFD QEDISIPFPQ RDVHIYQTGK
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