| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0436 |
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| Symbol | |
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| ID | 4923292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 486271 |
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| End bp | 488043 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161965 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001092567 |
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| Protein GI | 127511370 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAA TCGACCTGAG CAGTGAACTG GATAAGATCA TCGAGAATGA GAAGATCCAT
GTGCTGTTTC AGCCCATCTT CAACATCAAC AGCCAGCGGC TACATGGCTT CGAGGCCCTG
AGCCGCGGAC CCGAGCATAG CGCCCTCTTC TCTCCCGTGC CCCTGTTTCA GACCGCGGCC
CACGAGGGAC GCCTGTCCGA GCTTGAAGAG ATCTGCCGTC GTCACTCCAT CAGGCAGTTC
GACGCCCGCG AGTTGCCGGG CAAACTGTTT ATCAACATCT CCCCCAAGGC CCTGCTGGAA
CCCAGCCACG CCAAGGGACT CACCCTCAGC CTGGTGCAGG AGCTGGGGCT GTCGCCGGAT
CAGATAGTAA TAGAGCTGTC GGAGCAATAT CCCGCCGACG ATATCGATCT TCTGAAGGAA
TGTCTCAACC ACTACCGCAG CCAGGGGTTT CTGACCGCCA TCGACGACCT CGGCACCGGC
TATTCGGGGT TGCGACTCTG GTCCGAACTG GCGCCAGACT ATGTCAAGAT AGACCGCCAC
TTCATCCACC AAATCGACCA ATCGCCGGTG AAGCAGGAGT TTGTCCGCTC CATCATAGAT
CTCTGCCAGA GCCTCAGCTG TAAGGTGATC GCCGAAGGGA TAGAGACACC TGCGGAACTG
GCGCTGCTAA CCCAGCTAGG CATAGTCTAT TGTCAGGGCT ACCTGCTGGG CCGCCCCCAA
ACGCAACCGA CACAGACACT GAAGGCAGTG GCGCCACAGG AAACCAAGCA GCGACAGACC
CGCTACGCCG AATCGGCCGA AAGCCTGTCG ACCCGCACCA TATGCGTGAC ACCCGAGACC
AAGCTCAAGG CCCTGAGCGC CCGCTTCGTG CGCTCGCCGC ACCTGCAGGT AGTCGCCATC
GTCGATGCTA AGCAGAAACC CCTTGGCGTC GTCGACAGGG CGCAGTTGAT GGAGCTGTTC
AGCACCCCCT ATGGCCGTGC CCTGCACGAG AACAGCCCTG TGATAGAGGT GATGAACGAC
AAGGTGCTGA AGGTGCCAGC CTGCATGCCG ATCTCCGAGG TGAGTCAGTG CCTGACCGCA
GAACACGGCA CGGTTGCACA ACATTTCATG GTGATGCGCG AGCAACAACT GTTAGGAATA
GGCCACACCA AAGATCTGCT GCAACAGATC ACCGAGCAGC GCATCAAGAT GGCCCGTCAC
GCCAACCCTC TGAGCGGCCT TCCCGGCAAC ATCCCCATTC AGGAGGAGCT ACAACGCCTG
CGCCAACAGG GTCGCGCCTT CTATCTAGCC TATTTCGACC TGTGCCACTT CAAGCCCTAC
AACGATATCT ATGGCTTCTG CCGCGGCGAT GAGGTGATCC AATCTTTGGC GCTACGCCTG
CAGCAGCAAC TGGGTAGCGA GCATTTTGTC GGCCATGTGG GCGGCGATGA TTTTGTGGTG
ATAGGCACAA GCCAAGCGAT CGTCGACGAG TGTCGCCGAC TGCTGCTCAG CTTTAACCAA
GACAGAGAAG CCTTCTATAG CCCAGACGAC TGGCTGGCCC AGTGCGTGAT GGCCGAAGAC
AGACAGGGAC AGAGGGTGGC CCACCCTTTA ATCAGCCTGT GTGTTGGCCT GCTGCCCCCC
GAGGTGACGC GCTTTTGCGA CGAGCAGGGG CTATCGGCCT ATAGCGCGGC GGCAAAAAAA
CAGGCCAAAG CCGCATTGAA TGGCTTTAGC CTGTTTACGC CCGCGCCCAA CGACGCGGCA
ATTGCCATGT ATCGGCCGCT CAAGTTCGCC TGA
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| Protein sequence | MTAIDLSSEL DKIIENEKIH VLFQPIFNIN SQRLHGFEAL SRGPEHSALF SPVPLFQTAA
HEGRLSELEE ICRRHSIRQF DARELPGKLF INISPKALLE PSHAKGLTLS LVQELGLSPD
QIVIELSEQY PADDIDLLKE CLNHYRSQGF LTAIDDLGTG YSGLRLWSEL APDYVKIDRH
FIHQIDQSPV KQEFVRSIID LCQSLSCKVI AEGIETPAEL ALLTQLGIVY CQGYLLGRPQ
TQPTQTLKAV APQETKQRQT RYAESAESLS TRTICVTPET KLKALSARFV RSPHLQVVAI
VDAKQKPLGV VDRAQLMELF STPYGRALHE NSPVIEVMND KVLKVPACMP ISEVSQCLTA
EHGTVAQHFM VMREQQLLGI GHTKDLLQQI TEQRIKMARH ANPLSGLPGN IPIQEELQRL
RQQGRAFYLA YFDLCHFKPY NDIYGFCRGD EVIQSLALRL QQQLGSEHFV GHVGGDDFVV
IGTSQAIVDE CRRLLLSFNQ DREAFYSPDD WLAQCVMAED RQGQRVAHPL ISLCVGLLPP
EVTRFCDEQG LSAYSAAAKK QAKAALNGFS LFTPAPNDAA IAMYRPLKFA
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