Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0425 |
Symbol | |
ID | 4924394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 478213 |
End bp | 479313 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640161954 |
Product | ABC-2 type transporter |
Protein accession | YP_001092556 |
Protein GI | 127511359 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACTCG CTAGCCTGAG GCGGATAAAA TCGATCACCA CCAAGGAGAT CCGCCAACTC AAACGGGATC GCATTACCTT CGGCATGGTG GTGATGATCC CCCTGATCCA GCTGTTGCTG TTTGGCTACG CCATCAATAC CGATGTGCGT AACGTGCCCG TGGTGGTGGT GGACCAGAGC CACTCCGCCG CCGGACGCTG GATCGTCGAG GCCGTCAAGG TGACTCAGGT GGTCAGCATA GAGAAGCACT ATGCCAGCGC CGAGGAGGCC GAGGCCGCCA TCACCCGTGG CGAGGTGCGC GCGGCGCTGA TATTGCCGCC TAACCTTACC GAGAAGCTCG CCAACGGCGA GACACTGGGC CAATGGGTGG TCGACGGTTC GGATACTATG GTGGCCTCGG CCATCAGCCA GCTGAGGAAC ATGCCGCTGG ATCAGATCAC GGGCCAAGAC ACCCAGCGGC TGCCCACCTT CGAGGTCGCC CTCTTCTACA ACCCAGAGCA GCGCTCGGCG GTCAACATAG TGCCAGGGCT GATCGCGGTG ATCCTCACCA TGACAATGAT CCTCTTTACC TCGGCGGCCA TAGTAAGAGA GCGCGAACGT GGCAACCTGG AGCTGCTGAT CACCACCCCC ATCAAGCCCT TAGAGTTGAT GCTCGGTAAG ATAGTCCCCT ATATCTTGGT GGGGCTGGTG CAGATGACCA TCATCCTCGG GCTTGGGCAT CTTATCTTCG ATGTGCCCAT CAATGGCGCC ATCGCCCAAC TGCTGATGGG CACCCTGCTC TTCATCGCCG CCAGCCTCAC CCTGGGGCTG ATCATCTCCA CCATAGCCAA GACCCAGCTA CAAGCGATGC AGATGACTAT CTTCATCATA CTGCCCACTA TCTTGCTGTC GGGCTTCATG TTTCCCTTCG AGGCCATGCC TAAGCCGGCC CAGTGGATCG CCGAGCTGCT GCCCGCCACC CACTTCATGC GCATCATTCG CGCCATCGTC CTGCGGGGCG GCGCCCTGAG CGACATGCAG TTCGATGCCC TCTGGCTTAT CGGCTTCACC CTGGTCGGTA TCTTGGTCGC CTCGCTGCGC TTCAATAAGC GCCTCGATTG A
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Protein sequence | MLLASLRRIK SITTKEIRQL KRDRITFGMV VMIPLIQLLL FGYAINTDVR NVPVVVVDQS HSAAGRWIVE AVKVTQVVSI EKHYASAEEA EAAITRGEVR AALILPPNLT EKLANGETLG QWVVDGSDTM VASAISQLRN MPLDQITGQD TQRLPTFEVA LFYNPEQRSA VNIVPGLIAV ILTMTMILFT SAAIVRERER GNLELLITTP IKPLELMLGK IVPYILVGLV QMTIILGLGH LIFDVPINGA IAQLLMGTLL FIAASLTLGL IISTIAKTQL QAMQMTIFII LPTILLSGFM FPFEAMPKPA QWIAELLPAT HFMRIIRAIV LRGGALSDMQ FDALWLIGFT LVGILVASLR FNKRLD
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