| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0402 |
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| Symbol | |
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| ID | 4923579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 450126 |
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| End bp | 452828 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161931 |
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| Product | MSHA biogenesis protein MshQ |
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| Protein accession | YP_001092533 |
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| Protein GI | 127511336 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0473177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATAGAC TCTTGCTAAC CTTGCTTGCT GGTTTGTTTT ACCTAGTCTT CTCCACAGGG
GTTTTCGCCG TGCCTCAGTG TGATGCGATC TTTACCGACC CGCCAACCGG AAACCATAAT
CCCGGCCTGG TGCCGCCCGA TGATATTGGG CCTAGACTCG GCAACCTCAC TTGTACTAAG
TGGGGATGTT CTGGGCACAG TTCACGGTTC GCTCCCGGGG ATTACGACTT TGCTACTGGT
GATTTTCAAA ATAAATCCTA TATGAGCACC ACGGGGAAAA CGGCTCGACT CTACTTCGAT
AACCTGTCGA TGAATAATGC CAGCATCAAT GCATCTGGCA ATGCCGAAAA CCTGATCATC
TATGTCAGGG GCGATCTCTC TGTCGCCGGG CAGAACTATC TCAACGGCAT CCTCTATGTT
GCCGGCACTG TGACTTTTAC CGGCAATGCT TGGATAGATG GCGCCATCGC ATCAGGGGGG
AGCCTGAGTT TTGGCGGCAA TGGTGGAGCG GATGTCGACC TGGGAGCTGT GGATGATGCC
GACTTCGGCG GCATGTGTGA CAAGGGCGGT GTGAGTGTCG ACCATTACCG GCTCGAATTT
ACCTCGGATG CGCTGAGCTG CGCCGCCAAA GATATCCTGC TGCGTGCCTG TGTCAACGCC
GACTGCTCGA CCCAGGCGAG TGTCTCCTCG AGCGTCGAGC TGACCAAGAA CGGCGTGAAA
TATGCCGATG TTGGCTTTAC CGGTTCGGCT CAGACCCAGG TGTGGCACCC AGACGGCGGC
AGCGTCCTCT TGGGACTTGG CACTACGGCA CCATCCGCGC CCTATCGCTG TTATATCGAC
GGTGCTCTGG TGGCTAATGC CCAGTGCCTG CTCGACTTTG CCGATACGGG ATTCTATTTC
GATGTGCCCG ACAGCACCGC CTGTAAGACG GGTAACAGCT TTAATTTGTT TGCTGTGACC
AAGGATACTC AGACTCAGCA GTGTAAGCCC CTGTTTGCCA ACCAGACCAA GACGATTAGC
TTCGGCTTCG ATTATCTGCG TCCGGCAACG GTAAACAATC CGGCCCAGCT TACCCTGAAT
AGCCTGTTAT CGCCGAGTGA CTCGATAGCG ATCGATGGTG GCGGCACTCA GACAATGCAG
GTGCATTTTA ACGGTGAAGG AGTTGCCAGT CTGTCGGCCA ACTACCCAGA GGCGGGCGTG
GTGACGCTTA GCGCCGAAAA TAACCACACT GTTTCGCGTC CTGCCGGAGG CTCAGAGACG
CTAGTGCTCA CCCATAGCGA TAGCTTTACC TCGGCGCCCG CCGGTTTTCA TTTTGCCAAT
GTCAGTGCCA ATGGGCGCTG TGATGCCAGC GATCCCTATG ACGCTGACTG TAAGGTGCTG
GCCGCAGCGG GTGAACCCTT TAGCATGCAG GTGACTGCAG CCTGTTGGCA GAGCGATGAT
GATAAGGATT TCGGTAACAA CAAGGCATTG CAGAATTTCG AGCATGGCGG CCTGTCCGTG
GTGTCACAGG TGGTACAGCC CGATACCGGG GTAAACGGCG TGTTAGGCAG TGATAGCCTG
GCGTTCTCAC TATCATCTGG CGTCAGCGCT CAGATCATCG ACGATCAAAG CTGGAGCGAG
GTGGGCACCA TGAAGGTGGC GCTTGGCGCG GATGTCAGCT TTGAGGGCGT GACCATTCCC
GCCAGCCAGT CTAGCAGTGA GGTATTTGGC CGTTTCACAC CGGCCTATCT AGAGATCACT
GGCAACGACC CTGAGGCGGC CCAGAGCTGC GGCCCATTCA CCTATCTGGA TCAGCCCTTC
GGCTTTAAAA CGGGCACCGA GCCAAACATT CAGGTGGCGG GGTTAAATGC CCAAGATAAG
GTTACCAGCA ATTACCAGAT CGGCGATTGG TGGCGTTACA AACACAGGGA TGAGGCAGAT
CGCAATCAGT GGCCTGAGCG CAGCTATCAA GACAGCACAG GGCTAGCTGT GATTGGCGAC
AGTCAGGCAC CGGCACTCTC AGGCCAGGTC AATTATCGCG GTTCACCCAA TATCGCTGAG
TTGATCGGCG CCCAGCCGAG TTACCGCCGC ACCCAAACGC CACAGGAACC CTTCGATGCC
AAGTTTGATC TAATCTTGTC GGCGCTGGAC GTCAGCGATG AAGATGGCAT CTGTTATCGT
GACAGCGCCT CGGCTGCTTG CCGCGGATTT ACCTTCAGCG ATATCGGCGA CGGTAAGGCC
TTCGAGCTGC GCTATGGCCG TCTGGTGCTG GAAAACGGCT ATGGCCCTCA GTCGGAGGGC
CTGCGGCTGC CGCTACGCAG CGAATATGTT TCAAGCGTGA CTGCTGGCGT GACCACCTGG
ACACTCAATG GCGACGACAA TTGCTCGGTT TTTAATACCC AGACCTCCTT AGATGCCGGC
GAGTCGGCAA CCTCTGGCCT GTATCGCATC CTACCTTCGG GCTTCCCCGA TCTGCAGGCC
TATAGCGATA GTGGATTGTC GCTGCGCAGT GGTGCCTTGG TGAATGGCGT GGGCAATCTC
TATTTTGCCA TCCCCAATCA GGCGGGCGAG GTGCCCCTCA AGCTGCATGT CGAGCCTTGG
CTCAAGGGCT ATTGGAACTA TCCGGGGAAC GCTGCCGATA CCTTGTTTGA CCCGAGGGCC
AATGCCTATT TTGGCACCTA TCGCGGACAC GATAAGATCA TCTATTGGCG GGAAGTGAAA
TAG
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| Protein sequence | MNRLLLTLLA GLFYLVFSTG VFAVPQCDAI FTDPPTGNHN PGLVPPDDIG PRLGNLTCTK
WGCSGHSSRF APGDYDFATG DFQNKSYMST TGKTARLYFD NLSMNNASIN ASGNAENLII
YVRGDLSVAG QNYLNGILYV AGTVTFTGNA WIDGAIASGG SLSFGGNGGA DVDLGAVDDA
DFGGMCDKGG VSVDHYRLEF TSDALSCAAK DILLRACVNA DCSTQASVSS SVELTKNGVK
YADVGFTGSA QTQVWHPDGG SVLLGLGTTA PSAPYRCYID GALVANAQCL LDFADTGFYF
DVPDSTACKT GNSFNLFAVT KDTQTQQCKP LFANQTKTIS FGFDYLRPAT VNNPAQLTLN
SLLSPSDSIA IDGGGTQTMQ VHFNGEGVAS LSANYPEAGV VTLSAENNHT VSRPAGGSET
LVLTHSDSFT SAPAGFHFAN VSANGRCDAS DPYDADCKVL AAAGEPFSMQ VTAACWQSDD
DKDFGNNKAL QNFEHGGLSV VSQVVQPDTG VNGVLGSDSL AFSLSSGVSA QIIDDQSWSE
VGTMKVALGA DVSFEGVTIP ASQSSSEVFG RFTPAYLEIT GNDPEAAQSC GPFTYLDQPF
GFKTGTEPNI QVAGLNAQDK VTSNYQIGDW WRYKHRDEAD RNQWPERSYQ DSTGLAVIGD
SQAPALSGQV NYRGSPNIAE LIGAQPSYRR TQTPQEPFDA KFDLILSALD VSDEDGICYR
DSASAACRGF TFSDIGDGKA FELRYGRLVL ENGYGPQSEG LRLPLRSEYV SSVTAGVTTW
TLNGDDNCSV FNTQTSLDAG ESATSGLYRI LPSGFPDLQA YSDSGLSLRS GALVNGVGNL
YFAIPNQAGE VPLKLHVEPW LKGYWNYPGN AADTLFDPRA NAYFGTYRGH DKIIYWREVK
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