| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0400 |
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| Symbol | |
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| ID | 4920884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 448909 |
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| End bp | 449706 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161929 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001092531 |
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| Protein GI | 127511334 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.642203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCTGC AAACTAACAA GGGCTTCACC CTGGTCGAGA TGGTGACTGT CATCATCATA
CTCGGCATCC TGGTGGTCGG GGTGAGTAGC TTCGTGATCT TGGGCACCCG TATCTTCGTC
GAATCCAGCT CTGTGGATCA GGTGCTGAGC CAGAGCCGTT TCGTGATTGA GCGTATGACG
CGGGAGCTGC GTAACGCCCT GCCAAACAGC ATCCGGGTGG CCAGCTCAAG CGATGCCCAG
TGCATAGAGT TTATGCCTAT CACAGCTAGC GCCAGCTATA TCAGCCTGCC GATAGCGCCA
GACAGCGCCA CAGACAGCGG CAGCGTGATG CTCCCGGCCC AGGGGATTAA CCTGGCCCAC
AAGATGGTGA TCTATCCGCT TTCACCTGCT CAGCTCTACC AAGACAGTCC GTCGACCACA
CAGGGGCGTA TCTTCGATGT TAAACAGCTG AGCGGCAATC AGATTGAGTT TAACAATGCG
CTGCGCTTCG ATGAGGCCTC GCCTCAGAAG CGCTACTTCA TAGTCAATGG CGCCGTGAGT
TACTGCTTCT TAAGTCGCGG CGATATCAGG CGTTACGACG GCTACGGGGT TCAGACAACC
CAGCCGACAC CTGCGCAGAT GGGGACGGGG GCCTTGATGG GCCAGCATGT GGTCAATAAT
CTCGGCAGCG AGGAGCCGAT TCACTACACA CCGGGTACAC TGGTTAACAA TGCCGTGGTG
CAGCTGTCGC CCCGTTTCGA GGTGAATGGC CAGACCTTTC AATATCAACA TCAGGTGCAG
GTGATCAATG TTCCCTAA
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| Protein sequence | MRLQTNKGFT LVEMVTVIII LGILVVGVSS FVILGTRIFV ESSSVDQVLS QSRFVIERMT
RELRNALPNS IRVASSSDAQ CIEFMPITAS ASYISLPIAP DSATDSGSVM LPAQGINLAH
KMVIYPLSPA QLYQDSPSTT QGRIFDVKQL SGNQIEFNNA LRFDEASPQK RYFIVNGAVS
YCFLSRGDIR RYDGYGVQTT QPTPAQMGTG ALMGQHVVNN LGSEEPIHYT PGTLVNNAVV
QLSPRFEVNG QTFQYQHQVQ VINVP
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