| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0397 |
|---|
| Symbol | |
|---|
| ID | 4920975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 447281 |
|---|
| End bp | 447772 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640161926 |
|---|
| Product | methylation site containing protein |
|---|
| Protein accession | YP_001092528 |
|---|
| Protein GI | 127511331 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.061774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC AGAAAGGTTT TACACTAATT GAGTTGGTGG TCGTAATTAT CATTTTAGGT
ATTTTGGCGG TGACCGCGGC GCCAAAGTTT ATCAACCTAC AAAGTGATGC ACGTAAATCG
ACGGTTGAAG GTATGAAGGG GGCACTACAG GGTGCCAATA CCTTGCTTTA CTCCAAGGCC
GCAATCCAGG GTAAAGAAAA AGATGCTAAT TCGAATGACG CAAATAACGT TGATACGACT
GGAGACGGCA CTGCTGATAC CAAAGCAGTA TATGGTTACG TGAAGGCGGA TGCGACAGAG
CTAGCTAAAG TACTTGAAGT GGATAGTGCT GATTGGACGA TAGCTGCACC AGCAGCTGGT
GTGAGCACTG CCGATATCAT CATTCATCCT GCAGATTTTA CTCCGGCGGC AGATAAGAAG
TGTTTCCTTG AGTACACGGA TGCAACATCC AGCAGCTTGC CTGTTTACAA AACCGTTTTA
GATAACTGTT AA
|
|---|
| Protein sequence | MNKQKGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARKS TVEGMKGALQ GANTLLYSKA
AIQGKEKDAN SNDANNVDTT GDGTADTKAV YGYVKADATE LAKVLEVDSA DWTIAAPAAG
VSTADIIIHP ADFTPAADKK CFLEYTDATS SSLPVYKTVL DNC
|
|---|
| |