| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0396 |
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| Symbol | |
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| ID | 4921202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 446757 |
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| End bp | 447266 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640161925 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001092527 |
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| Protein GI | 127511330 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0195536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGC AAAACGGCTT TACACTGATC GAGCTAGTGG TTGTGATCAT CATCTTAGGG
ATTCTGGCCG TGACCGCAGC GCCTAAGTTT ATTAACTTAC AGAGCGATGC GCGTGCATCG
ACGGTTGAAG GGGTAAAAGC GGCACTGCAA GGCGCTAATT CACTCGTTTA TTCTAAGGCG
GCGATTGCCG GCAAAGAGAA GGATCAAGGA GCGTCTATTA CAATCGCTAC CGGCGTGGCC
GTCACAACAG ATTATGGATA CTTGGACAGT GCAACCGATA CGGCGACGGT AAAGACAAAC
TTAGAGAAAG CCATGGATAT GACTTTTGAA GCCTTGAGCG CTGCTGATAG TGTTACAGCC
CAAGATTGGG GCGTACTCTA TTCTAGTGAG ACTAAGTTTA TCATAGTGCC TAAGGGCAAG
AAGTCGACAG ATGCATGTCG CATAGACTAT ACGACGGCTG GGAATGCAAG CACACCTGCG
GTTGTCACCG CTGTTACTAC AGATTGTTAA
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| Protein sequence | MKKQNGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARAS TVEGVKAALQ GANSLVYSKA
AIAGKEKDQG ASITIATGVA VTTDYGYLDS ATDTATVKTN LEKAMDMTFE ALSAADSVTA
QDWGVLYSSE TKFIIVPKGK KSTDACRIDY TTAGNASTPA VVTAVTTDC
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