| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0395 |
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| Symbol | |
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| ID | 4921269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 446032 |
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| End bp | 446667 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640161924 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001092526 |
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| Protein GI | 127511329 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0635812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAATGC GAGCCCAAAA CATGCCAACC AAACAGAGTG GTTTCTCTCT GATCGAGCTG
GTGATCGTGA TTGTGATCCT GGGAATTCTG GCGGCCACTG CCATTCCCCG TTTTTTGAAT
GTGACCGACG ATGCAGAAGA TGCTAGCGTA GATGGCGTAG CCGGTGGTCT AGCCACGGCG
GTGAGCTTCG TGCGCTCCCA ATGGGAGGTG GATGGTCGTA ATAATGCCAA TGTGGTGCTC
GATGGTACGC AGATCTCCCT GGATACCCGT TTCGGTTTTC CAACGGGCTT GACCTCGGGC
AGTGGTATCG TGAGTGCGAC CGGTATGACA GATGCCGCCT GTCAGGAGGT ATTCCAGAAT
ATTCTTCAGG GCGCACCGCG TAACGTGCTC TTTAATCAGG ATGCCCGTAA TCAGCGCTTT
ACAGCGCGGG TATTGGATGG CGCAGGGGGG AATGGCGTTG CGATCGATGG CACTCAGGTG
ACCAACTTAG ATCTCTGTGT CTACCATCAG GTGACCTCGC TGGCATTAAA CCCAACCACG
GGCGTGCCAA CACCTACACC GGATCTGGAT ACGGCTAATG CTAAAGGGAT CCTCTATAAC
CCTGGTACTG GTCAGGTGTT GAGTTTTACC AATTAA
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| Protein sequence | MKMRAQNMPT KQSGFSLIEL VIVIVILGIL AATAIPRFLN VTDDAEDASV DGVAGGLATA
VSFVRSQWEV DGRNNANVVL DGTQISLDTR FGFPTGLTSG SGIVSATGMT DAACQEVFQN
ILQGAPRNVL FNQDARNQRF TARVLDGAGG NGVAIDGTQV TNLDLCVYHQ VTSLALNPTT
GVPTPTPDLD TANAKGILYN PGTGQVLSFT N
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