| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0391 |
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| Symbol | |
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| ID | 4921799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 441297 |
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| End bp | 442457 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161920 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001092522 |
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| Protein GI | 127511325 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCA TCAATACCAT GCTCAAAGAT CTGGATAAGC GCCAGCAGTC CCATGGGCTG
GATGAGCTGC CTGTGCCGCC GCTGCAATAT CGTCAGGCGC CTCAGTCGCG TCTGCCCTGG
TTGCTGCTCG CACTGCTTGC TCTGCTGCTG TTGGCCATGG GCTATCTGGC GTGGGATCGC
TACGCGGCCC TCGAGCGCAC TAATCTGGCG CTGCAACAGG ATAATCAGAT TCTGGCCCAG
GAGATCGCCA GTGGCGACCT CAAACAGCCG AGCGTAGAAA AAGTCGCTTC GAATGAAACG
GCACTGGCAG CAGATGAAGC GCCTGCCGAG GAATCAAAGA CTGAGGCTTC ACTGGCAGCA
GATGCTCAGG TTACAGCCAA AATCGAGTCT AGTGCCGAAG CTAGTGCTGA GCTCATGACT
ACATCTAATA CTGACCCGGT TGCTGAGCCT AAGGTCGAGA GCAAGCCAGC TGTTGAGAGC
AAGCCTTCCG CTAAGTCTCA GAGGGTTCGG GTCGAGCAGA CAGCGGACGC CAACACAGCA
AAAACGACCG GCTCCATGGC GGTGACCGAG GTGAAGCTAT CGCCCGAGGC GCTGGCCGAG
AAACGTTTCA GTCAGGGCAA GTCGGCCCAG GAGGGTGGGC AACTGTCCCA GGCAGTGGAT
GACTTTAGCG AGGCGATAAG ACTCGATCCC ACCCTGCACG GCGCGCGTCA GCATCTGGCT
GCCCTCTATT ATGGTCAGGG GCAGTTGGGT GAGGCTAAGA CAGTGCTGCA ACAGGGCCTC
GCCCGCTATC CCCAGGAACT TGATTATGCC CTCATGCTGG CCAAAGTGTT GGAGGCACAG
GGGGATAGCC AGGGGGCCTT GGCGGCGCTT GGCACGATCC CAGACGATCA CCTGCTCGCC
AAGCAGAAGT GGGTGCAGCA GAGTCATCTT GCCCAGCAGG CATCGCAATT TGCCTTGGCC
GAAGAGAGTT ATCGCCGCCT GGCCAGGGTC GAACCCACGC AGGCCAAGTG GTGGATGGGG
CTGGCCTACG CCTTAGATTC CCAGCAAAAA TATACCAGCG CCAAGCAGGC TTACGGTCAG
GCCCTAGGCT TATCCGGCTT GTCGCAGCAG GCCAGCGATT TTATTCAGCA GCGACTGGCC
CAGTTAGGAG ATATCGAGTG A
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| Protein sequence | MSVINTMLKD LDKRQQSHGL DELPVPPLQY RQAPQSRLPW LLLALLALLL LAMGYLAWDR
YAALERTNLA LQQDNQILAQ EIASGDLKQP SVEKVASNET ALAADEAPAE ESKTEASLAA
DAQVTAKIES SAEASAELMT TSNTDPVAEP KVESKPAVES KPSAKSQRVR VEQTADANTA
KTTGSMAVTE VKLSPEALAE KRFSQGKSAQ EGGQLSQAVD DFSEAIRLDP TLHGARQHLA
ALYYGQGQLG EAKTVLQQGL ARYPQELDYA LMLAKVLEAQ GDSQGALAAL GTIPDDHLLA
KQKWVQQSHL AQQASQFALA EESYRRLARV EPTQAKWWMG LAYALDSQQK YTSAKQAYGQ
ALGLSGLSQQ ASDFIQQRLA QLGDIE
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