| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0384 |
|---|
| Symbol | |
|---|
| ID | 4924002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 434107 |
|---|
| End bp | 436017 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640161913 |
|---|
| Product | regulatory protein CsrD |
|---|
| Protein accession | YP_001092515 |
|---|
| Protein GI | 127511318 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGA CACAACTCCT CACCAAGAAG TTAACCGGCT TTTGGCTGCT TTCCCTCGCT
GCGGTCGCCT TCATCTTTCT GCTTACCGCC CTGGTCAGTT TCATTCAGCT CACCTATAAG
TTTCAACAGC AACAGATGAC AGAGCTGGAA GAAATGTTAC TGCAGCATCA GGTGAGGCAC
GAGCTTCAGC ACCTGGATAT CTGGTTGCCG CAGATCCTGG CCGCTTACGA TGCACAAAAA
TTTACCCTGA TCCGGGGTGA TGAGACGCTG TACCGCTTCG ACCGGGGTAA TCATGATCAG
AGTGTGGTCA ACTACGACAG GGTACTCAAC GAAACCTTAG ACCTGCATTT TCATATCAGC
CTGCCTCAGC CCTTCCTGCT GCACAACATC AGCTGGCACG GCGGTCTGGT GTTCCTGGTG
GGATGCATAG CGGTAGGCCT GCTGGTGCGC CGCGGCTATC TCTGGCTGGC CCTGCAGCTG
CAGGGCATAG AAGATCTGGC TAAGCGTAGT CATCTGATCC TCTCGGGAGA CTATGACAAG
GCGCTGGCCG AGACGGGCCA TGGCCGTCCA AGGCTTATCA ACCGCGCCTT GACCCAGATG
TTGCTTGAGC TCGATGATGC CCAGAAGCAG CGCGCCAGGT TCGATCAGTT TATTCGCTCC
AACACCTTCC TCGACCCCGA GTCGGGCATC GGCAATCGCC TGTTCCTCAA GAACCGCCTG
GACGCCCTGA GCAACAAGGA TGGCATGATG GCCCCCGGGG TACTGCTACT GCTGGAGATG
GAAGATCTGG ATCTCTTACA GCAGGAGGCA GACGAGTTCA GCATTCAGGA GCTGCTCACC
CAGACCATAG GCGGCATCAG TCACCTGCTG GACAGCCAGG CCAACAGCAT CTTCTCTCGT
CGCTCCTACA ATCAGTTTGC CATAGTCGTG CCGCAGATCT CCCTGGCCGA TGCCGAGAAG
CTGGCCGCCA GGCTGCTCAA GGTCTGCCTG AGTCAGCCCC TGGAAGGGGT GAACAATCGC
GACGATTTCT TTCATATTGG CGTCGCCTAC TTCAAGGTGG GCGAGAGCAA GGAGCAGCTG
ATCGAAGAGG CCGAGATGGC GCTGCGGGCG GCCCAGTTTC AGGGCAATAG CGGCTGGTTC
ATGTATGACA AGGGCGCGGT GGATGAGGAG TTTGCCAGAG GCTCGGTGCG CTGGCGCAGC
TTTCTCGAGT ATGCTCTGGT CAACAAGCGC GTGGTGCCCT TCACCCAGGC GATACTCGAC
AGCGATGGCA AGGAGCACCA TAGCGAGGTC TCCTGTCGTC TGCGCGACAG CAGCGACAAC
CTGGTGCGCG CCACCCTGTT CTTGCCCATG GCGATCAAGT GCGGCTTGAT CCCCCAGATC
GAGCGTCAGG TGATCGAGGC CGTGTTGTTC GATCTGTTAC CCAAGTCACC CAAGGACCAG
CGGAAATACA GTATTAATCT CTCTCTGGAT ACGCTGACCA GCCGCGCCTT TATCCGTTGG
CTACAGACGA CCCTGCTGGA GTATCGTCAC CTGACGCCGC GGCTGATCTT CGAGATCAAC
GAAGATATCC TGGTGAATAA TCTGGCGAAA CTGAAGGCAC CGCTGGATAT GATCGCCAAG
ATGGGTGCCA GCCTGTGTGT CGACCGGGTG GGGCAGCAGG TGGTGAGTAC CCAGTATCTT
CAATCTTGCC GCGTAGATCT GATTAAGCTG CACAGATCTA TCGTACGACA GATACATTTA
CGCCAAGAAA ATCAATTGTT TGTCAGAAGC CTTATCGGCG GACTCTATCG CACCGAGGTG
CAGGTCTTTG CCGAAGGGGT CGAGTCGCTG GAGGAGTGGC AGACGTTGAA GATTTTAGGG
GTGAGTGCAG GACAGGGCAG TTTCTTTAGC GATCCCCTAG AGGCCGCGTG A
|
|---|
| Protein sequence | MKLTQLLTKK LTGFWLLSLA AVAFIFLLTA LVSFIQLTYK FQQQQMTELE EMLLQHQVRH
ELQHLDIWLP QILAAYDAQK FTLIRGDETL YRFDRGNHDQ SVVNYDRVLN ETLDLHFHIS
LPQPFLLHNI SWHGGLVFLV GCIAVGLLVR RGYLWLALQL QGIEDLAKRS HLILSGDYDK
ALAETGHGRP RLINRALTQM LLELDDAQKQ RARFDQFIRS NTFLDPESGI GNRLFLKNRL
DALSNKDGMM APGVLLLLEM EDLDLLQQEA DEFSIQELLT QTIGGISHLL DSQANSIFSR
RSYNQFAIVV PQISLADAEK LAARLLKVCL SQPLEGVNNR DDFFHIGVAY FKVGESKEQL
IEEAEMALRA AQFQGNSGWF MYDKGAVDEE FARGSVRWRS FLEYALVNKR VVPFTQAILD
SDGKEHHSEV SCRLRDSSDN LVRATLFLPM AIKCGLIPQI ERQVIEAVLF DLLPKSPKDQ
RKYSINLSLD TLTSRAFIRW LQTTLLEYRH LTPRLIFEIN EDILVNNLAK LKAPLDMIAK
MGASLCVDRV GQQVVSTQYL QSCRVDLIKL HRSIVRQIHL RQENQLFVRS LIGGLYRTEV
QVFAEGVESL EEWQTLKILG VSAGQGSFFS DPLEAA
|
|---|
| |