Gene Shew_0383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0383 
Symbol 
ID4924001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp432685 
End bp433932 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content57% 
IMG OID640161912 
Productmalate dehydrogenase 
Protein accessionYP_001092514 
Protein GI127511317 
COG category[C] Energy production and conversion 
COG ID[COG0281] Malic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGATT TCCGTCAGCA AGCCCTTGAC TACCATGAGT TCCCCGTACC AGGCAAAACC 
GCCGTTAGCC TGACCAAGCC CGCAGAGACC AGCATGGATC TGGCGCTGGC CTATAGTCCG
GGTGTGGCCG AGCCGGTGCG TGAAATTGCT GCCAATCCTG ACGATGCCTA CCGTTACACC
GCCAAGGGCA ACACGGTTGC TGTGATCTCT AACGGTACCG CCATCTTAGG TCTGGGTAAC
CTGGGCCCAC TGGCCTCTAA GCCTGTGATG GAAGGTAAGG CGCTGCTGTT CAAACATTTC
GCCAATATCG ATGCCACAGA CATAGAGGTG AAGCACCGCA CTGCAGAAGA GTTTATCAAC
ACGGTCGAGG CGATTGCCGA TACCTTCGGT GGCATCAACC TGGAAGATAT CAAGGCGCCC
GAGTGTTTCG AGATCGAGAA GGCGCTGATT GAGCGTTGTA ACGTTCCTGT ATTCCACGAC
GATCAGCACG GCACGGCCAT CGTGACTGCA GCCGGCATGA TCAACGCCCT GGAGATCCAG
GGTAAGAAGC TGGAAGAGGC TGTCTTTGTC TGTATGGGCG CAGGTGCGGC GGCTATCGCC
TGTATGACCA TGCTGGTGAA GTGCGGCGTG CAGCGTGAGA ATGTCTACAT GCTGGACCGT
AAGGGCGTTA TCCACACCCG TCGTGAAGAT ATCAACGAAT ACAAGGCGCT GTTTGCCAAC
AACACAGACA AGCGCACCCT GCAGGATGTG ATCAAGGGCG CCGACGCCTT CCTGGGTCTG
TCTGGCCCAG ACGTGCTGAG TGCTGAAGAC GTTGCCCTGA TGGCCGACAA ACCGGTGATC
TTCGCCTGTT CAAACCCAGA TCCAGAGATC AAGCCTGAGC TGGCCCACGA TGTACGTAAA
GATCTGATCA TGGGTACCGG CCGCAGCGAT TACCCTAACC AGGTGAACAA CGTGCTCTGC
TTCCCCTTCA TCTTCCGTGG TGCCCTGGAT GTACGCGCCG CAAAGATCAA CGACGAGATG
AAGATTGCCG CGGTACACGC CATCGCAGCC CTGGCGAAAG AGCCTGTGCC AGCCGAGGTA
TTGGCTGCTT ATCCAGACGT GACCGAGCTG AAGTTTGGTC CAGATTACGT GATCCCTAAG
CCGATGGATC CACGCCTGCT GTCAAACGTG GCCAAGGCCG TTGCCCAGGC GGCTATCGAC
TCGGGTGTCG CGGCCTTGCC AACACTGCCT GAGCACTACA TGGCCTAA
 
Protein sequence
MADFRQQALD YHEFPVPGKT AVSLTKPAET SMDLALAYSP GVAEPVREIA ANPDDAYRYT 
AKGNTVAVIS NGTAILGLGN LGPLASKPVM EGKALLFKHF ANIDATDIEV KHRTAEEFIN
TVEAIADTFG GINLEDIKAP ECFEIEKALI ERCNVPVFHD DQHGTAIVTA AGMINALEIQ
GKKLEEAVFV CMGAGAAAIA CMTMLVKCGV QRENVYMLDR KGVIHTRRED INEYKALFAN
NTDKRTLQDV IKGADAFLGL SGPDVLSAED VALMADKPVI FACSNPDPEI KPELAHDVRK
DLIMGTGRSD YPNQVNNVLC FPFIFRGALD VRAAKINDEM KIAAVHAIAA LAKEPVPAEV
LAAYPDVTEL KFGPDYVIPK PMDPRLLSNV AKAVAQAAID SGVAALPTLP EHYMA