Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0383 |
Symbol | |
ID | 4924001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 432685 |
End bp | 433932 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161912 |
Product | malate dehydrogenase |
Protein accession | YP_001092514 |
Protein GI | 127511317 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGATT TCCGTCAGCA AGCCCTTGAC TACCATGAGT TCCCCGTACC AGGCAAAACC GCCGTTAGCC TGACCAAGCC CGCAGAGACC AGCATGGATC TGGCGCTGGC CTATAGTCCG GGTGTGGCCG AGCCGGTGCG TGAAATTGCT GCCAATCCTG ACGATGCCTA CCGTTACACC GCCAAGGGCA ACACGGTTGC TGTGATCTCT AACGGTACCG CCATCTTAGG TCTGGGTAAC CTGGGCCCAC TGGCCTCTAA GCCTGTGATG GAAGGTAAGG CGCTGCTGTT CAAACATTTC GCCAATATCG ATGCCACAGA CATAGAGGTG AAGCACCGCA CTGCAGAAGA GTTTATCAAC ACGGTCGAGG CGATTGCCGA TACCTTCGGT GGCATCAACC TGGAAGATAT CAAGGCGCCC GAGTGTTTCG AGATCGAGAA GGCGCTGATT GAGCGTTGTA ACGTTCCTGT ATTCCACGAC GATCAGCACG GCACGGCCAT CGTGACTGCA GCCGGCATGA TCAACGCCCT GGAGATCCAG GGTAAGAAGC TGGAAGAGGC TGTCTTTGTC TGTATGGGCG CAGGTGCGGC GGCTATCGCC TGTATGACCA TGCTGGTGAA GTGCGGCGTG CAGCGTGAGA ATGTCTACAT GCTGGACCGT AAGGGCGTTA TCCACACCCG TCGTGAAGAT ATCAACGAAT ACAAGGCGCT GTTTGCCAAC AACACAGACA AGCGCACCCT GCAGGATGTG ATCAAGGGCG CCGACGCCTT CCTGGGTCTG TCTGGCCCAG ACGTGCTGAG TGCTGAAGAC GTTGCCCTGA TGGCCGACAA ACCGGTGATC TTCGCCTGTT CAAACCCAGA TCCAGAGATC AAGCCTGAGC TGGCCCACGA TGTACGTAAA GATCTGATCA TGGGTACCGG CCGCAGCGAT TACCCTAACC AGGTGAACAA CGTGCTCTGC TTCCCCTTCA TCTTCCGTGG TGCCCTGGAT GTACGCGCCG CAAAGATCAA CGACGAGATG AAGATTGCCG CGGTACACGC CATCGCAGCC CTGGCGAAAG AGCCTGTGCC AGCCGAGGTA TTGGCTGCTT ATCCAGACGT GACCGAGCTG AAGTTTGGTC CAGATTACGT GATCCCTAAG CCGATGGATC CACGCCTGCT GTCAAACGTG GCCAAGGCCG TTGCCCAGGC GGCTATCGAC TCGGGTGTCG CGGCCTTGCC AACACTGCCT GAGCACTACA TGGCCTAA
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Protein sequence | MADFRQQALD YHEFPVPGKT AVSLTKPAET SMDLALAYSP GVAEPVREIA ANPDDAYRYT AKGNTVAVIS NGTAILGLGN LGPLASKPVM EGKALLFKHF ANIDATDIEV KHRTAEEFIN TVEAIADTFG GINLEDIKAP ECFEIEKALI ERCNVPVFHD DQHGTAIVTA AGMINALEIQ GKKLEEAVFV CMGAGAAAIA CMTMLVKCGV QRENVYMLDR KGVIHTRRED INEYKALFAN NTDKRTLQDV IKGADAFLGL SGPDVLSAED VALMADKPVI FACSNPDPEI KPELAHDVRK DLIMGTGRSD YPNQVNNVLC FPFIFRGALD VRAAKINDEM KIAAVHAIAA LAKEPVPAEV LAAYPDVTEL KFGPDYVIPK PMDPRLLSNV AKAVAQAAID SGVAALPTLP EHYMA
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