| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0380 |
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| Symbol | |
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| ID | 4920603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 430339 |
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| End bp | 431115 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161909 |
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| Product | hypothetical protein |
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| Protein accession | YP_001092511 |
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| Protein GI | 127511314 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGAG TGCAATATCT GGTCATGCTG TGCCTAGTGC TGCTAGGGCA AGCCGGGCTA
ATGAGTCTGC CCGCCTGGGC TAAGCTTACC CACGTCAGTA TCAATCAAAG GCTGTCAGAT
CTGGGGCAGC GCCCGACGCT CAGGGTCAAT ATCGTTACCC AATCGGTCAA CCTGGATAAG
GTGCAGTTTA TCGTCGAGCA GCGCTCCGGC AGCGAGCGAT TGATGGTCAA GCCGATGAAC
TCCTATATGT TGCTGCTAAG TGGCGTCGAA GAGGTGGAAG ATGGCGAGGC GCAGCTGGTG
GTCAAGGAGT ATCTGGTCAA CAACTGGCAG GAGGTGAAGC GCATGCCGCT GTTTGATGCC
GCCACGGCTT ATCAGCAGAG CAAGCCGGTT AAACCAAAGC CTGTCAAATC AAATACGCCG
GTTAAAACAG CCAAGACCAA CAAGCAGCCG TCGCAACCCC TTGCCGCTGC CCAGCAGTCA
CTAGCAAGTT TGCCGCCTGT CGATGTAGGC GATCGGGTGC AGCAGGGATG TCAGCTGGAT
TATGCCCCGC CTCAGACCCT GTGGCGCCTC GGCAGCACCT ACGCCAAGCA GTGGCAGCTG
AGCACCTATG GCGCCATGCT GGCCATCTTC GAGGCGAACC CCAATGCCTT TAACGATCGC
AAGATCAATG GCCTGCGGGC AGATGTGACC CTTAAGTGCC CGTCGGCGGC CCTCAAGCAG
AGATACCAGA GCGCCGATGC GGCAAGAGCA GCCTTCGAGG CGCTGACGGC AGAATAG
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| Protein sequence | MKRVQYLVML CLVLLGQAGL MSLPAWAKLT HVSINQRLSD LGQRPTLRVN IVTQSVNLDK
VQFIVEQRSG SERLMVKPMN SYMLLLSGVE EVEDGEAQLV VKEYLVNNWQ EVKRMPLFDA
ATAYQQSKPV KPKPVKSNTP VKTAKTNKQP SQPLAAAQQS LASLPPVDVG DRVQQGCQLD
YAPPQTLWRL GSTYAKQWQL STYGAMLAIF EANPNAFNDR KINGLRADVT LKCPSAALKQ
RYQSADAARA AFEALTAE
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