Gene Shew_0378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0378 
SymbolargS 
ID4921410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp426010 
End bp427755 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content58% 
IMG OID640161907 
Productarginyl-tRNA synthetase 
Protein accessionYP_001092509 
Protein GI127511312 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0018] Arginyl-tRNA synthetase 
TIGRFAM ID[TIGR00456] arginyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAC ATATTCAATC TTTGCTCGAA CAAGCCATTC AAACCCTAAA ACAGCAGGCG 
ATCATCCCTG CCGATTTTGA GGCTCGTATT CAGGTTGACC GAACCAAAGA CAAAACCCAC
GGTGATTTTG CCACCAACCT AGCCATGATG CTGACCAAGG TGGCTCGCAA GAATCCTCGT
GAGGTCGCAC AGCTGATAAT CGATAGCCTG CCACAAAACA GCCAGGTGGC TAAAGTTGAG
ATCGCCGGCC CAGGTTTCAT CAACTTCTTT ATCGATGAGA ACGCCCTGAC CAACCAGCTG
ATGGCCGCCC TGAGCGACGA TCACCTGGGT GTAACCCTGC CAACGCCGCA GACAGTGGTG
GTCGACTACT CTTCGCCAAA CCTGGCCAAA GAGATGCACG TAGGCCACCT ACGTTCAACC
ATTATCGGTG ACGCCGTGGT ACGCGCGCTG GAGTTCCAGG GTCACAAGGT GATCCGCCAG
AACCACGTCG GCGACTGGGG CACCCAGTTC GGCATGCTGC TGGCCTACAT GGAAGAGCTA
CGCGCCCAGC AAGGCGAGCA AGCCCAGGTT GAACTGGCGG ATCTCGAGAG CTTCTACCGC
GCCGCAAAGG TACGTTTCGA CGAGTCGGAA GAGTTTGCTA CCCGCGCTCG CCAGCTCGTG
GTTGAGCTGC AATCGGGCGA CGAGTACTGC AACAAGCTAT GGCGTGAATT TAACGATATC
TCACTGAGCC ATTGCCACGA GGTTTATGAG CGTCTGGGCG TGAGCCTGAC CCGCGCCGAC
GTGCGCGGCG AGAGCGCCTA CAACGATGAC CTCGAGCAGG TGGTACGGGA TCTGGATGCC
CAGGGCCTAT TGTCAGAAAG TAACGGCGCC AAGGTGGTCT TCCAGGATGA GTTCCAAACC
AAAGAGGGTG AACCACTGCC TGTGATCATC CAGAAGGCCG ACGGCGGCTT CCTGTATGCC
ACCAGCGATC TGGCGGCGAT GCGCTATCGC TCAAACGTAC TCAAGGCCGA CCGCGCCCTG
TACTTCGTCG ACCTGCGTCA GGCCCTGCAC TTCCAGCAGG TATTCAGCCT GGCCCGCACC
GCTAACTTCG TCCGTCCAGA GCTGAGTCTG GAACACATGG GCTTTGGCAC CATGAACGGC
GAAGATGGTC GCCCATTCAA GACCCGCTCT GGTGGCGTGG TGAAGCTGGT TGATCTGCTG
AGCGAGGCCG AGACCCGTGC GCTGGAACTG GTACGCAGCA AGAATCCAGA TATGGATGAA
GAGGAGCTGG CCAAGATCGC CAAAGTGGTG GGTATCGCCT CGGTGAAATA TGCCGACCTG
TCGAAGAACC GCGCCAGTGA CTACATCTTC AGCTTCGAGC AGATGCTGAG CTTCGAGGGC
AACACGGCGC CTTACCTGCT CTACGCCTAC ACGCGTGTTG CAGGCATCTT CAAGCGTGCG
GCCGAAATCG ACCTCACGGG CGCCAGCATC AAGCTGGAGC ACGACAAAGA GAAAGAGCTG
GGCAACAAGC TGGCCCAGTT TGCCGAGGTG CTAGGCCGCA TGGTGGCCAA GGGTCAGCCT
CACGCCCTGT GTGGCTACCT GTTTGAACTG GCTGGCGCCT TCTCAAGCTT CTACGAGGCC
TGCCCAGTGC TGGCGGCCGA CTCAGAAGAT GAGAAGAAGA GCCGTCTATT GCTAGCACAG
CTGACCGCTA AGACGCTGAA GCAGGGTCTT GATCTACTGG GTATCGAAAC CTTAGAACGC
ATGTAG
 
Protein sequence
MKSHIQSLLE QAIQTLKQQA IIPADFEARI QVDRTKDKTH GDFATNLAMM LTKVARKNPR 
EVAQLIIDSL PQNSQVAKVE IAGPGFINFF IDENALTNQL MAALSDDHLG VTLPTPQTVV
VDYSSPNLAK EMHVGHLRST IIGDAVVRAL EFQGHKVIRQ NHVGDWGTQF GMLLAYMEEL
RAQQGEQAQV ELADLESFYR AAKVRFDESE EFATRARQLV VELQSGDEYC NKLWREFNDI
SLSHCHEVYE RLGVSLTRAD VRGESAYNDD LEQVVRDLDA QGLLSESNGA KVVFQDEFQT
KEGEPLPVII QKADGGFLYA TSDLAAMRYR SNVLKADRAL YFVDLRQALH FQQVFSLART
ANFVRPELSL EHMGFGTMNG EDGRPFKTRS GGVVKLVDLL SEAETRALEL VRSKNPDMDE
EELAKIAKVV GIASVKYADL SKNRASDYIF SFEQMLSFEG NTAPYLLYAY TRVAGIFKRA
AEIDLTGASI KLEHDKEKEL GNKLAQFAEV LGRMVAKGQP HALCGYLFEL AGAFSSFYEA
CPVLAADSED EKKSRLLLAQ LTAKTLKQGL DLLGIETLER M