Gene Shew_0351 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0351 
Symbol 
ID4920782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp400254 
End bp400946 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content55% 
IMG OID640161879 
ProductTPR repeat-containing protein 
Protein accessionYP_001092482 
Protein GI127511285 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4235] Cytochrome c biogenesis factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.590847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAGTT TAGTGTTCGC CATGGCGGTA ACCCTGGTCT GTTTTATTGC GCCCATCTGG 
CGCCACTATT TCATCCAAGA GGAAAACGCC CTGGCTGGCG ATGCGACCAT CCCTGCTAGG
AAGCAGACCC TGACACCTAT TGTGGTGACA GGCATGCTAC TGCTGATACC ACTTACCCTC
TATGGCCTGC TGGGCCGCTT CAACGACTGG CATACCGGCC AGATCGACGA GAACATCGAT
TATTTGATCG CCGCCGACAT CAACAAGAAT GCGCGCATCT TGGATGACAC GCCTCTAGAC
CGACTGGCCT TGCTTAACCT GGCCAATGCC TACGCCGAAG GGGGACGCTA CAGCGAGGCG
GTAGAGACCT TAGATAAATT ACTGGCAATA GCGCCCGACG CCGAGCTGTA TGGCATGAAG
GCGACGGCGC TCTATTACCG TGATAACCGC GCCATGAGCC TGGAGGTCTC CCTCGTGATA
TCCCAGGCGC TGGCGCTCGA CCCCGAGGAA GTGCAGTCAT TGCTGCTGAT GGCGACCCAC
GCTTATCTGA ACAAGGATTT TCAGCAAGCG ATCGTCCATT GGCGGCAGTT ACTGGACAGC
GATAACCCCA ACATAAACCG AGCATCGATT AACAGTGCGA TTGTCAACGC TGAGCAGAAG
ATGGCTAACC GTACCGTGAC TGCATCTGAG TAA
 
Protein sequence
MISLVFAMAV TLVCFIAPIW RHYFIQEENA LAGDATIPAR KQTLTPIVVT GMLLLIPLTL 
YGLLGRFNDW HTGQIDENID YLIAADINKN ARILDDTPLD RLALLNLANA YAEGGRYSEA
VETLDKLLAI APDAELYGMK ATALYYRDNR AMSLEVSLVI SQALALDPEE VQSLLLMATH
AYLNKDFQQA IVHWRQLLDS DNPNINRASI NSAIVNAEQK MANRTVTASE