| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0341 |
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| Symbol | |
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| ID | 4920671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 387111 |
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| End bp | 389840 |
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| Gene Length | 2730 bp |
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| Protein Length | 909 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640161869 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001092472 |
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| Protein GI | 127511275 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000307773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTAA ATAGACTGGC TCAATACGTG AGTTTGGCCT GTGGTGGTTT AGCTGCGATA
GCTGTTCCGA CGTTTGCGGC CGACAATAGT GATGAGACTG TTGAGCGTAT TGAAGTGACT
GGCTCGCGAA TAAAGCGCAT TGACATGGAA GGGGCTAGCC CTATCACTAC CATTACCGCA
GATGAGCTGG CTAAATCGGG CTTTTCGACA GTGGGTGATG CGTTGCGTAG TTCTAATTTG
AATGCCTTTG GCTCATGGGG CGGCGGTTCT AACAATGGGT GGGGATCGCA AGCAACAGTG
CAGCTTAAGG GAGCTTCTGC TTTTCATACG CTAACCTTGT TAGATGGTAA GCGTATGGCT
AAGTCTCCAG TAATGGATGG TGGTGCGGCT AATATCAATA CGATTCCAAT GGCTGCGGTA
GAGCGTATCG AGATTCTTAC CGACGGCGCA TCTGCTATTT ATGGAACTGA TGCTATAGCC
GGTGTAGTTA ATATTATTCT CAAGAAAGAT TTCGAGGGTA TTCAATTTGA TGCTCGTATG
GATAGACCGA CCCAAGAGGG GGGGGACTCT TCCAACATGT CGTTCACAGG TGGTCTAGAT
TCAGAGAAGG GACATCTGGT TTTTACTGTT GAGCATTATG AGTCACAAAA AATCATGCAG
AAGGATCGCT GGTATACCAG ACCTTTTGTC AAAGAAGGTG GCAATCCTGA AGACTATCAA
GATTGGGTCA ATATCAGTCC TACTGGCCGT GTGCTCACGC AAGGTGATGC GGGCGGTTGG
GTTTATTCAA CACCGTTTTC AAATTCCGAT AAGAGCTGTG CCGATGTTTA TGGCGAGGCC
TTTATCGGCT CTTTGATTGA TAGTGATTAT CCAGGGGATA CACTATGTGC TTACGATTAC
ACTCAAGCAG CCGCAACGTC CGTTGGCCAA ACTCGAAATA ATACATTGAT TCATTATTCA
TACGAGTTAA CCGATAGCAT TGAATTAACT GCGAGAGCCT ATTGGGCGTC AAATGAGACA
AAGGATATTT CTGCGCCTGT ACCTGCTTCT ATTAGTATTC CCGAAGGGTT GCCCGCCTAC
ACGACCCCGG AGGGGTTAGA GCTTGTCGAA TTGGTTGCAG ATCCTAGCGC AGGAATGAAT
TATCGATTTG ATACGGCTGG CGACAGGGTC GCAGAGCATC ACGATAATAT TTATGATTTC
CTCATAGGAC TAGATGGTTC AGCAGAGAAT TTCGATTGGG ATGTCGCAGT TAATTACAAC
AAATATGATA ACTACACTTG GGGAACTGGT TATCAATTAA AAGGGGCGAC GACAGATCTT
GTTGGTCATT GGGATGAAGA TACAAACTCT TTCGTAGGTT GGGACCCTCG AGATCCAAAC
TCAGCCTTAC CTCCTGGGGC AACGGCTAAC TATGATAAGC GCATGTCAGC GTCTTATTTG
GACGTTAATG GCGGCCTTTC TTTTAACTTA TTTGAGTTAC CAGCCGGAGA TGTAGGCATG
TATATCGGTG CTTCTTATCG AGAAGAAACA CTGGACTCTA AAGTAGATGC GTTAGCCGAA
GCAGGTCAGA TAGTTGGTGG CAATGGTGGC TCAGGTGGTG CAGGTGAGCG TGATGTTAAA
GCGGCATACT TCGAGGTTGT TCTGCCCATT ATTGACAGCC TAGAGTTGAA CCTTGCTGGT
CGCTACGATG ATTATTCTGA TTTTGGGGGT ACCTTTAATC CTCAGGTTTC TATTCGTTAT
AACGTTATAG ACTCGCTATT ACTGCGTGGC TCTTGGGGAA CAGGTTTCCG TGCTCCAACC
TTGTCTGACT TGTATCAAGG CACTTCTGAA GGCTTTGGTT ATATTAAGAA TTACCTCAAC
TGTTACAAAG AAGGCGAAGA CATTGATACT TGTGATCGCT GGGATTATGG CGCAACACGA
ACTGGTGGCA ATGAGGCGTT AAAGCCTGAA GAGTCAGAAT CTTACAATAT TGGTGTGGTT
TGGGAAGTGA CAGACGAAAT CAACCTATCG GTTGACTATT GGTCATTGGA AACGACTAAC
CTCATATCAG AGCTTGATGC GAGTGAAATC GTAAGAACTC AGGCAAAGCT ATGGGAACTT
GCTGATGCCA ATGGGGAACC TCGCCCTGAT GTTTCTAGCG TATATCCTGG TACCTCAATA
AGCCAAATCG GTAACGGTAA GATTGATTAT GTTGTCAGTC AGAAACTTAA CGTCGGATTG
AGTGAACGAG AAGGGATAGA CGTAAAACTG GGCGCAGGTT TTGGTTCTGA CTACGGTGAC
TTCAAATTTG GCTTGGGCTG GTCTTATTTC TTAAAGTATA AGTCGTCCTA TTCGCAGGCA
GGTGCGCAGA TCTTGTCTGA TGATTATGCC GGTCGCGAAG ATACCCCTGC GCATAGAATA
AATCTAACCG CTGATTATAG TTTTGGCGAT CACGCGCTGA GTTACTTTGG TAACTATATT
GGCTCTCAAA AGAGTTGGGA TATAGTAGAA GGAAGCTGGG ACGCCGAAGC TGGTGAGACC
GCTGATGATG GGCAACTTTA TGAAGTTGAT TCTGTTTTCT ATCATAACCT TACTTACACC
TACACTCTGC CTTGGAACAA TAGCATTTCC TTAGGTGTTA CTAACCTTAC AGATGAAGAT
CCTAAGTTCA AATACGATGG TACATACAAC GGTAATTTGT ATGATATTCG TGGACGGACC
TATTGGGCTG GATTCCGTCA GTCTTTCTAA
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| Protein sequence | MKLNRLAQYV SLACGGLAAI AVPTFAADNS DETVERIEVT GSRIKRIDME GASPITTITA
DELAKSGFST VGDALRSSNL NAFGSWGGGS NNGWGSQATV QLKGASAFHT LTLLDGKRMA
KSPVMDGGAA NINTIPMAAV ERIEILTDGA SAIYGTDAIA GVVNIILKKD FEGIQFDARM
DRPTQEGGDS SNMSFTGGLD SEKGHLVFTV EHYESQKIMQ KDRWYTRPFV KEGGNPEDYQ
DWVNISPTGR VLTQGDAGGW VYSTPFSNSD KSCADVYGEA FIGSLIDSDY PGDTLCAYDY
TQAAATSVGQ TRNNTLIHYS YELTDSIELT ARAYWASNET KDISAPVPAS ISIPEGLPAY
TTPEGLELVE LVADPSAGMN YRFDTAGDRV AEHHDNIYDF LIGLDGSAEN FDWDVAVNYN
KYDNYTWGTG YQLKGATTDL VGHWDEDTNS FVGWDPRDPN SALPPGATAN YDKRMSASYL
DVNGGLSFNL FELPAGDVGM YIGASYREET LDSKVDALAE AGQIVGGNGG SGGAGERDVK
AAYFEVVLPI IDSLELNLAG RYDDYSDFGG TFNPQVSIRY NVIDSLLLRG SWGTGFRAPT
LSDLYQGTSE GFGYIKNYLN CYKEGEDIDT CDRWDYGATR TGGNEALKPE ESESYNIGVV
WEVTDEINLS VDYWSLETTN LISELDASEI VRTQAKLWEL ADANGEPRPD VSSVYPGTSI
SQIGNGKIDY VVSQKLNVGL SEREGIDVKL GAGFGSDYGD FKFGLGWSYF LKYKSSYSQA
GAQILSDDYA GREDTPAHRI NLTADYSFGD HALSYFGNYI GSQKSWDIVE GSWDAEAGET
ADDGQLYEVD SVFYHNLTYT YTLPWNNSIS LGVTNLTDED PKFKYDGTYN GNLYDIRGRT
YWAGFRQSF
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