| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0326 |
|---|
| Symbol | |
|---|
| ID | 4922616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 371917 |
|---|
| End bp | 372639 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640161854 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001092457 |
|---|
| Protein GI | 127511260 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAGTG TGGCGATAGG TCTGCGACCC TTTAAGGCGA TCAGCTTCGA TCTGGACGAT
ACCCTGTATG ATAACCGGCC TATCATCATG GCGGCTGAGC AGCGCCTGCT AAGCTTTCTG
GCACAAAGGC ATCCACTGAC CCAAGCTTGG AGCCTGGATG ATTGGCAGGT ATTGAAGCGC
AGTTTGATAA GACAATCCCC AAGCCTGGCC CACGACACCT CGGCGGCGCG CCTGGTTACT
CTGGAGCAGG GGCTGATAAC CCTAGGTTAC GCTAAGACGC AGGCGGGCGA GGCGGCGCAG
CAGGCCCTGG CCTACTTTGT CGAGCAGCGC TCCGACTTTA CCGTCGCGCC CGAGGTGATC
GCCAAGCTCA CTCGTCTGGC ACGGCACTAT CCCTTGATTG GCATCACCAA CGGCAATGTC
GATGCTCAGC GGATTGGGCT GGGTGAGGTG CTGGAGTTCG TCCTGCATCC CGGCAATGGC
ACTCGCATGA AGCCCTATCC CGATATGTTC TATCAGGCCT GTCAACGGCT GGATATCGGC
TGTCATGAGC TCTTGCACCT TGGTGACAGC TTTAAGGCCG ACGTTCAGGG GGCTCGCCGC
GCGGGTTGCC AGGCTGCCTG GCTGAATCCG GCGGTTGGAA GGGAACCACA GCTAATTTCT
GAGGGGCAAC TACCCCATAT GACCTGCAGC GATCTTGACG ATCTGCTGGC CCTTATCGAC
TAA
|
|---|
| Protein sequence | MVSVAIGLRP FKAISFDLDD TLYDNRPIIM AAEQRLLSFL AQRHPLTQAW SLDDWQVLKR
SLIRQSPSLA HDTSAARLVT LEQGLITLGY AKTQAGEAAQ QALAYFVEQR SDFTVAPEVI
AKLTRLARHY PLIGITNGNV DAQRIGLGEV LEFVLHPGNG TRMKPYPDMF YQACQRLDIG
CHELLHLGDS FKADVQGARR AGCQAAWLNP AVGREPQLIS EGQLPHMTCS DLDDLLALID
|
|---|
| |